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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1197780 |
| Transcript ID | Lj2g3v1197780.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ASC1-like protein-like [Glycine max] gi|356558997|ref|XP_003547788.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 36 | 36 | – | – | |
| PANTHER | 22 | 320 | 299 | 1.40E-190 | ||
| PANTHER | 22 | 320 | 299 | 1.40E-190 | – | |
| TMHMM | 35 | 57 | 23 | – | – | |
| Phobius | 37 | 57 | 21 | – | – | |
| Phobius | 58 | 89 | 32 | – | – | |
| SMART | 85 | 299 | 215 | 5.90E-73 | ||
| ProSiteProfiles | 85 | 299 | 215 | 27.647 | ||
| Pfam | 86 | 292 | 207 | 6.90E-40 | ||
| Phobius | 90 | 109 | 20 | – | – | |
| TMHMM | 90 | 109 | 20 | – | – | |
| Phobius | 110 | 140 | 31 | – | – | |
| TMHMM | 140 | 159 | 20 | – | – | |
| Phobius | 141 | 159 | 19 | – | – | |
| Phobius | 160 | 219 | 60 | – | – | |
| TMHMM | 166 | 188 | 23 | – | – | |
| Phobius | 220 | 244 | 25 | – | – | |
| TMHMM | 223 | 245 | 23 | – | – | |
| Phobius | 245 | 266 | 22 | – | – | |
| TMHMM | 266 | 288 | 23 | – | – | |
| Phobius | 267 | 288 | 22 | – | – | |
| Phobius | 289 | 320 | 32 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj2g3v1197780.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1197780.2, powered by CORGI.
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