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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1203430 |
| Transcript ID | Lj2g3v1203430.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like [Cicer arietinum] gi|502154632|ref|XP_004509767.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 82 | 759 | 678 | 0 | ||
| PANTHER | 82 | 759 | 678 | 0 | – | |
| SUPERFAMILY | 121 | 282 | 162 | 8.00E-174 | – | |
| Gene3D | 124 | 269 | 146 | 6.60E-93 | ||
| SMART | 136 | 476 | 341 | 5.70E-113 | ||
| Coils | 136 | 163 | 28 | – | – | |
| Pfam | 137 | 476 | 340 | 5.00E-82 | ||
| Gene3D | 302 | 476 | 175 | 6.60E-93 | ||
| SUPERFAMILY | 310 | 756 | 447 | 8.00E-174 | – | |
| Gene3D | 477 | 559 | 83 | 1.40E-30 | ||
| Coils | 515 | 535 | 21 | – | – | |
| Gene3D | 569 | 598 | 30 | 1.10E-26 | – | |
| Pfam | 599 | 746 | 148 | 2.50E-63 | ||
| Gene3D | 599 | 679 | 81 | 1.40E-31 | – | |
| Gene3D | 682 | 707 | 26 | 1.10E-26 | – | |
| ProSitePatterns | 687 | 698 | 12 | – | ||
| Gene3D | 708 | 746 | 39 | 2.80E-09 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-directed 5'-3' RNA polymerase activity | Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. |
Expression pattern of Lj2g3v1203430.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1203430.2, powered by CORGI.
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