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Lj2g3v1277750.1

Overview

Field Value
Gene ID Lj2g3v1277750
Transcript ID Lj2g3v1277750.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: protein PHR1-LIKE 1-like [Cicer arietinum] gi|502143659|ref|XP_004505417.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31499:SF11
5 156 152 2.30E-93 –
PANTHER
PTHR31499
5 156 152 2.30E-93 –
Gene3D
G3DSA:1.10.10.60
15 73 59 1.10E-29
IPR009057
SUPERFAMILY
SSF46689
16 72 57 2.69E-16
IPR009057
TIGRFAM
TIGR01557
17 72 56 1.10E-21
IPR006447
Pfam
PF00249
19 70 52 7.60E-08
IPR001005
Pfam
PF14379
117 156 40 2.80E-20
IPR025756
Coils
Coil
119 139 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj2g3v1277750.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1277750.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.