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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR025756
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 42 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.023s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0223589.1
n.a. PREDICTED: protein PHR1-LIKE 1-like isoform X1 [Cicer arietinum] gi|502116761|ref|XP_004495581.1| chr0 115330339 115334204 -
2 domain predictions
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Lj0g3v0223589.2
n.a. PREDICTED: protein PHR1-LIKE 1-like isoform X1 [Cicer arietinum] gi|502116761|ref|XP_004495581.1| chr0 115330339 115334204 -
2 domain predictions
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Lj0g3v0251039.1
n.a. Myb-like HTH transcriptional regulator family protein [Theobroma cacao] gi|508781804|gb|EOY29060.1| chr0 130163620 130168326 +
2 domain predictions
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Lj1g3v4048450.1
n.a. PREDICTED: protein PHR1-LIKE 1-like isoform X1 [Cicer arietinum] gi|502107507|ref|XP_004493285.1| chr1 47857089 47861308 +
2 domain predictions
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Lj1g3v4048450.2
n.a. PREDICTED: protein PHR1-LIKE 1-like isoform X2 [Cicer arietinum] gi|502107510|ref|XP_004493286.1| chr1 47857089 47861308 +
2 domain predictions
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Lj1g3v4317480.1
n.a. Myb family transcription factor APL [Medicago truncatula] gi|357509909|ref|XP_003625243.1| chr1 50739391 50745097 -
2 domain predictions
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Lj1g3v4317480.2
n.a. Myb family transcription factor APL [Medicago truncatula] gi|357509909|ref|XP_003625243.1| chr1 50739391 50745097 -
2 domain predictions
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Lj1g3v4317520.1
n.a. PREDICTED: transcription repressor KAN1-like isoform X1 [Cicer arietinum] gi|502109125|ref|XP_004493572.1| chr1 50763840 50766550 -
2 domain predictions
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Lj1g3v4317520.2
n.a. PREDICTED: transcription repressor KAN1-like isoform X1 [Cicer arietinum] gi|502109125|ref|XP_004493572.1| chr1 50763840 50766156 -
2 domain predictions
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Lj1g3v4515910.1
n.a. Two-component response regulator ARR [Medicago truncatula] gi|357510131|ref|XP_003625354.1| chr1 53138045 53144475 -
2 domain predictions
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Lj1g3v4998480.1
n.a. PREDICTED: protein PHR1-LIKE 1-like isoform X1 [Cicer arietinum] gi|502113704|ref|XP_004494732.1| chr1 60806217 60810231 +
2 domain predictions
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Lj2g3v1277750.1
n.a. PREDICTED: protein PHR1-LIKE 1-like [Cicer arietinum] gi|502143659|ref|XP_004505417.1| chr2 20438190 20439795 +
2 domain predictions
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Lj2g3v1536360.1
n.a. PREDICTED: myb family transcription factor APL-like [Glycine max] gi|356495941|ref|XP_003516829.1| chr2 24213475 24217148 +
2 domain predictions
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Lj3g3v0948270.1
n.a. IPN2 [Lotus japonicus] gi|311780285|gb|ADQ08683.1| chr3 11599502 11601909 -
2 domain predictions
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Lj3g3v0948270.2
n.a. IPN2 [Lotus japonicus] gi|311780285|gb|ADQ08683.1| chr3 11599502 11601909 -
2 domain predictions
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Lj5g3v0900910.1
n.a. PREDICTED: protein PHR1-LIKE 1-like [Cicer arietinum] gi|502122817|ref|XP_004497904.1| chr5 13428619 13432199 +
2 domain predictions
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Lj5g3v1697860.1
n.a. PREDICTED: myb family transcription factor APL-like [Cicer arietinum] gi|502118139|ref|XP_004496120.1| chr5 24448260 24451694 -
2 domain predictions
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Lj6g3v1694970.1
n.a. PREDICTED: myb family transcription factor APL-like isoform X1 [Cicer arietinum] gi|502079873|ref|XP_004486394.1| chr6 19171604 19176252 -
2 domain predictions
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Lj6g3v1694980.1
n.a. Myb family transcription factor [Medicago truncatula] gi|357448183|ref|XP_003594367.1| chr6 19181437 19186871 -
2 domain predictions
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Lj6g3v1694980.2
n.a. Myb family transcription factor [Medicago truncatula] gi|357448183|ref|XP_003594367.1| chr6 19181437 19186968 -
2 domain predictions
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LotjaGi1g1v0653900.1
n.a. MYB transcription factor; TAIR: AT2G01060.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q9SJW0|PHL7_ARATH Myb family transcription factor PHL7; TrEMBL-Plants: tr|A0A151TAH9|A0A151TAH9_CAJCA Myb family transcription factor APL; Found in the gene: LotjaGi1g1v0653900 LjG1.1_chr1 121331742 121336469 +
2 domain predictions
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LotjaGi1g1v0653900.2
n.a. MYB transcription factor; TAIR: AT2G01060.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q9SJW0|PHL7_ARATH Myb family transcription factor PHL7; TrEMBL-Plants: tr|A0A151TAH9|A0A151TAH9_CAJCA Myb family transcription factor APL; Found in the gene: LotjaGi1g1v0653900 LjG1.1_chr1 121331742 121336469 +
2 domain predictions
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LotjaGi1g1v0705400.1
n.a. Myb-like transcription factor family protein; TAIR: AT4G28610.1 phosphate starvation response 1; Swiss-Prot: sp|Q94CL7|PHR1_ARATH Protein PHOSPHATE STARVATION RESPONSE 1; TrEMBL-Plants: tr|G7KXD8|G7KXD8_MEDTR Myb-like transcription factor family protein; Found in the gene: LotjaGi1g1v0705400 LjG1.1_chr1 127386947 127393907 +
2 domain predictions
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LotjaGi1g1v0725600.1
n.a. Myb-like transcription factor family protein; TAIR: AT5G06800.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q0WVU3|PHL5_ARATH Myb family transcription factor PHL5; TrEMBL-Plants: tr|V7CVV7|V7CVV7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0725600 LjG1.1_chr1 129662236 129665134 -
2 domain predictions
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LotjaGi1g1v0784100.1
n.a. Myb-like transcription factor family protein; TAIR: AT5G29000.2 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1; TrEMBL-Plants: tr|I1JRR7|I1JRR7_SOYBN PHR2; Found in the gene: LotjaGi1g1v0784100 LjG1.1_chr1 135696290 135701595 +
2 domain predictions
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LotjaGi1g1v0784100.2
n.a. Myb-like transcription factor family protein; TAIR: AT5G29000.2 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1; TrEMBL-Plants: tr|I1JRR7|I1JRR7_SOYBN PHR2; Found in the gene: LotjaGi1g1v0784100 LjG1.1_chr1 135696459 135701154 +
2 domain predictions
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LotjaGi2g1v0302500.1
n.a. Myb family transcription factor APL; TAIR: AT1G69580.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|F4I274|PHL8_ARATH Myb family transcription factor PHL8; TrEMBL-Plants: tr|I3T9R2|I3T9R2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0302500 LjG1.1_chr2 77665336 77667830 +
2 domain predictions
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LotjaGi2g1v0341200.1
n.a. Myb-like transcription factor family protein; TAIR: AT5G45580.2 Homeodomain-like superfamily protein; Swiss-Prot: sp|C0SVS4|PHLB_ARATH Myb family transcription factor PHL11; TrEMBL-Plants: tr|V7CLJ1|V7CLJ1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0341200 LjG1.1_chr2 81816599 81823692 +
2 domain predictions
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LotjaGi3g1v0132600.1
n.a. Myb family transcription factor APL; TAIR: AT1G79430.2 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q9SAK5|APL_ARATH Myb family transcription factor APL; TrEMBL-Plants: tr|E5L8F7|E5L8F7_LOTJA IPN2; Found in the gene: LotjaGi3g1v0132600 LjG1.1_chr3 16605614 16608311 -
2 domain predictions
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LotjaGi3g1v0176800.1
n.a. Myb family transcription factor APL; TAIR: AT3G04030.3 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q9SQQ9|PHL9_ARATH Myb-related protein 2; TrEMBL-Plants: tr|I1LTV8|I1LTV8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0176800 LjG1.1_chr3 24592319 24596308 +
2 domain predictions
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LotjaGi3g1v0176800.2
n.a. Myb family transcription factor APL; TAIR: AT3G04030.3 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q9SQQ9|PHL9_ARATH Myb-related protein 2; TrEMBL-Plants: tr|I1LTV8|I1LTV8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0176800 LjG1.1_chr3 24592569 24595643 +
2 domain predictions
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LotjaGi3g1v0518900_LC.1
n.a. Myb-like transcription factor family protein; TAIR: AT5G29000.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|B8ANX9|PHR1_ORYSI Protein PHOSPHATE STARVATION RESPONSE 1; TrEMBL-Plants: tr|I3T4G1|I3T4G1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0518900_LC LjG1.1_chr3 93506420 93506972 +
2 domain predictions
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LotjaGi4g1v0003800.1
n.a. Myb family transcription factor family protein; TAIR: AT2G01060.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q9SJW0|PHL7_ARATH Myb family transcription factor PHL7; TrEMBL-Plants: tr|A5C966|A5C966_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0003800 LjG1.1_chr4 691131 695949 -
2 domain predictions
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LotjaGi5g1v0141600.1
n.a. Myb-like transcription factor family protein; TAIR: AT5G06800.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q0WVU3|PHL5_ARATH Myb family transcription factor PHL5; TrEMBL-Plants: tr|V7BIH1|V7BIH1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0141600 LjG1.1_chr5 35108241 35112394 +
2 domain predictions
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LotjaGi5g1v0209500.1
n.a. Myb-like transcription factor family protein; TAIR: AT5G29000.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1; TrEMBL-Plants: tr|G7I6T3|G7I6T3_MEDTR Myb-like transcription factor family protein; Found in the gene: LotjaGi5g1v0209500 LjG1.1_chr5 51261850 51266388 -
2 domain predictions
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LotjaGi5g1v0254900.1
n.a. Myb family transcription factor APL; TAIR: AT3G24120.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q94A57|PHL2_ARATH Protein PHR1-LIKE 2; TrEMBL-Plants: tr|K7LKE7|K7LKE7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0254900 LjG1.1_chr5 56392305 56395919 +
2 domain predictions
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LotjaGi6g1v0279400.1
n.a. Myb-like transcription factor family protein; TAIR: AT2G01060.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q9SJW0|PHL7_ARATH Myb family transcription factor PHL7; TrEMBL-Plants: tr|I3SAF9|I3SAF9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0279400 LjG1.1_chr6 59614627 59620411 -
2 domain predictions
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LotjaGi6g1v0279400.2
n.a. Myb-like transcription factor family protein; TAIR: AT2G01060.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q9SJW0|PHL7_ARATH Myb family transcription factor PHL7; TrEMBL-Plants: tr|I3SAF9|I3SAF9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0279400 LjG1.1_chr6 59615046 59617695 -
2 domain predictions
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LotjaGi6g1v0279500.1
n.a. Myb family transcription factor APL; TAIR: AT3G24120.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q94A57|PHL2_ARATH Protein PHR1-LIKE 2; TrEMBL-Plants: tr|I3SYI1|I3SYI1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0279500 LjG1.1_chr6 59624271 59630378 -
2 domain predictions
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LotjaGi6g1v0279500.2
n.a. Myb family transcription factor APL; TAIR: AT3G24120.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q94A57|PHL2_ARATH Protein PHR1-LIKE 2; TrEMBL-Plants: tr|I3SYI1|I3SYI1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0279500 LjG1.1_chr6 59624271 59630378 -
2 domain predictions
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LotjaGi6g1v0279500.3
n.a. Myb family transcription factor APL; TAIR: AT3G24120.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q94A57|PHL2_ARATH Protein PHR1-LIKE 2; TrEMBL-Plants: tr|I3SYI1|I3SYI1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0279500 LjG1.1_chr6 59624374 59630242 -
2 domain predictions
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LotjaGi6g1v0279500.4
n.a. Myb family transcription factor APL; TAIR: AT3G24120.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q94A57|PHL2_ARATH Protein PHR1-LIKE 2; TrEMBL-Plants: tr|I3SYI1|I3SYI1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0279500 LjG1.1_chr6 59624652 59626297 -
2 domain predictions
 –