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Lj2g3v1316330.1

Overview

Field Value
Gene ID Lj2g3v1316330
Transcript ID Lj2g3v1316330.1
Lotus japonicus genome version MG20 v3.0
Description Homeobox-leucine zipper protein [Medicago truncatula] gi|357486709|ref|XP_003613642.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
CDD
cd00086
1 51 51 5.28E-14 –
PANTHER
PTHR24326:SF176
1 132 132 8.50E-121 –
SMART
SM00389
1 54 54 8.70E-11
IPR001356
PANTHER
PTHR24326
1 132 132 8.50E-121 –
ProSiteProfiles
PS50071
1 50 50 16.714
IPR001356
Pfam
PF00046
2 48 47 3.60E-15
IPR001356
Gene3D
G3DSA:1.10.10.60
2 57 56 2.30E-19
IPR009057
SUPERFAMILY
SSF46689
2 59 58 2.05E-17
IPR009057
PRINTS
PR00031
21 30 10 6.50E-06
IPR000047
ProSitePatterns
PS00027
25 48 24 –
IPR017970
PRINTS
PR00031
30 46 17 6.50E-06
IPR000047
Coils
Coil
42 90 49 – –
Pfam
PF02183
50 90 41 3.60E-17
IPR003106
MobiDBLite
mobidb-lite
95 118 24 – –
PANTHER
PTHR24326
169 201 33 8.50E-121 –
PANTHER
PTHR24326:SF176
169 201 33 8.50E-121 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj2g3v1316330.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1316330.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.