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Lj2g3v1327450.1

Overview

Field Value
Gene ID Lj2g3v1327450
Transcript ID Lj2g3v1327450.1
Lotus japonicus genome version MG20 v3.0
Description Homeobox-leucine zipper protein [Medicago truncatula] gi|357486709|ref|XP_003613642.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24326
1 211 211 4.50E-154 –
PANTHER
PTHR24326:SF176
1 211 211 4.50E-154 –
MobiDBLite
mobidb-lite
50 79 30 – –
SUPERFAMILY
SSF46689
65 131 67 1.33E-19
IPR009057
ProSiteProfiles
PS50071
69 129 61 17.394
IPR001356
SMART
SM00389
72 133 62 1.80E-18
IPR001356
Pfam
PF00046
74 127 54 1.50E-15
IPR001356
CDD
cd00086
74 130 57 2.04E-16 –
Gene3D
G3DSA:1.10.10.60
76 136 61 1.40E-19
IPR009057
PRINTS
PR00031
100 109 10 1.10E-05
IPR000047
ProSitePatterns
PS00027
104 127 24 –
IPR017970
PRINTS
PR00031
109 125 17 1.10E-05
IPR000047
Coils
Coil
121 169 49 – –
Pfam
PF02183
129 169 41 6.00E-17
IPR003106
MobiDBLite
mobidb-lite
174 197 24 – –
PANTHER
PTHR24326:SF176
248 280 33 4.50E-154 –
PANTHER
PTHR24326
248 280 33 4.50E-154 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

Genome browser

LORE1 insertions 14

Expression data

Expression pattern

Expression pattern of Lj2g3v1327450.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1327450.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.