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Lj2g3v1349130.1

Overview

Field Value
Gene ID Lj2g3v1349130
Transcript ID Lj2g3v1349130.1
Lotus japonicus genome version MG20 v3.0
Description homeodomain leucine zipper protein HDZ2 [Phaseolus vulgaris] gi|15148918|gb|AAK84886.1|AF402605_1
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24326
72 209 138 5.40E-91 –
PANTHER
PTHR24326:SF190
72 209 138 5.40E-91 –
SUPERFAMILY
SSF46689
75 143 69 1.17E-19
IPR009057
ProSiteProfiles
PS50071
81 141 61 17.491
IPR001356
SMART
SM00389
83 145 63 8.90E-19
IPR001356
CDD
cd00086
84 142 59 1.41E-18 –
Pfam
PF00046
86 139 54 1.10E-16
IPR001356
Gene3D
G3DSA:1.10.10.60
88 148 61 7.90E-20
IPR009057
PRINTS
PR00031
112 121 10 4.90E-06
IPR000047
ProSitePatterns
PS00027
116 139 24 –
IPR017970
PRINTS
PR00031
121 137 17 4.90E-06
IPR000047
Pfam
PF02183
141 182 42 1.90E-17
IPR003106
Coils
Coil
154 181 28 – –
MobiDBLite
mobidb-lite
179 219 41 – –
PANTHER
PTHR24326
302 320 19 5.40E-91 –
PANTHER
PTHR24326:SF190
302 320 19 5.40E-91 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj2g3v1349130.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1349130.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.