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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1353620 |
| Transcript ID | Lj2g3v1353620.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: phospholipid-transporting ATPase 3-like [Glycine max] gi|356570066|ref|XP_003553212.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 602 | 602 | 0 | – | |
| Phobius | 1 | 390 | 390 | – | – | |
| PANTHER | 1 | 602 | 602 | 0 | ||
| TIGRFAM | 12 | 585 | 574 | 2.40E-233 | ||
| Gene3D | 16 | 140 | 125 | 2.50E-26 | ||
| Pfam | 19 | 60 | 42 | 2.20E-08 | – | |
| SUPERFAMILY | 19 | 147 | 129 | 1.40E-17 | ||
| SUPERFAMILY | 126 | 190 | 65 | 2.15E-32 | ||
| Gene3D | 141 | 200 | 60 | 1.10E-42 | ||
| SUPERFAMILY | 242 | 347 | 106 | 2.15E-32 | ||
| Gene3D | 270 | 355 | 86 | 1.10E-42 | ||
| TIGRFAM | 272 | 378 | 107 | 2.00E-32 | ||
| Pfam | 327 | 577 | 251 | 8.30E-81 | ||
| SUPERFAMILY | 348 | 577 | 230 | 3.14E-23 | – | |
| TMHMM | 358 | 377 | 20 | – | – | |
| Phobius | 391 | 411 | 21 | – | – | |
| TMHMM | 392 | 411 | 20 | – | – | |
| Phobius | 412 | 439 | 28 | – | – | |
| Phobius | 440 | 459 | 20 | – | – | |
| TMHMM | 440 | 459 | 20 | – | – | |
| Phobius | 460 | 473 | 14 | – | – | |
| TMHMM | 474 | 496 | 23 | – | – | |
| Phobius | 474 | 493 | 20 | – | – | |
| Phobius | 494 | 504 | 11 | – | – | |
| Phobius | 505 | 527 | 23 | – | – | |
| TMHMM | 505 | 527 | 23 | – | – | |
| Phobius | 528 | 538 | 11 | – | – | |
| Phobius | 539 | 563 | 25 | – | – | |
| TMHMM | 542 | 564 | 23 | – | – | |
| Phobius | 564 | 602 | 39 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Magnesium ion binding | Interacting selectively and non-covalently with magnesium (Mg) ions. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Phospholipid transport | The directed movement of phospholipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Phospholipids are any lipids containing phosphoric acid as a mono- or diester. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
Expression pattern of Lj2g3v1353620.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1353620.2, powered by CORGI.
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