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Lj2g3v1414910.2

Overview

Field Value
Gene ID Lj2g3v1414910
Transcript ID Lj2g3v1414910.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ADP-ribosylation factor 1-like isoform 1 [Fragaria vesca subsp]. vesca] gi|470137765|ref|XP_004304633.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11711:SF181
1 163 163 8.60E-146 –
SMART
SM00177
1 163 163 6.90E-115 –
PANTHER
PTHR11711
1 163 163 8.60E-146 –
SMART
SM00178
1 163 163 2.20E-16 –
Pfam
PF00025
5 163 159 5.30E-73
IPR006689
ProSiteProfiles
PS51417
11 163 153 22.728
IPR024156
SUPERFAMILY
SSF52540
14 163 150 1.23E-52
IPR027417
Gene3D
G3DSA:3.40.50.300
16 163 148 9.50E-68
IPR027417
TIGRFAM
TIGR00231
16 149 134 9.60E-24
IPR005225
SMART
SM00175
18 151 134 0.0065 –
CDD
cd04150
18 163 146 7.00E-114 –
PRINTS
PR00328
19 42 24 6.70E-20
IPR006689
PRINTS
PR00328
47 71 25 6.70E-20
IPR006689
PRINTS
PR00328
74 99 26 6.70E-20
IPR006689
PRINTS
PR00328
119 140 22 6.70E-20
IPR006689

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj2g3v1414910.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1414910.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.