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Lj2g3v1414930.1

Overview

Field Value
Gene ID Lj2g3v1414930
Transcript ID Lj2g3v1414930.1
Lotus japonicus genome version MG20 v3.0
Description Polygalacturonase [Medicago truncatula] gi|357485855|ref|XP_003613215.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE_N_REGION
1 10 10 – –
Phobius
SIGNAL_PEPTIDE
1 27 27 – –
SignalP
SignalP-noTM_EUK
1 32 32 – –
TMHMM
TMhelix
7 24 18 – –
Phobius
SIGNAL_PEPTIDE_H_REGION
11 22 12 – –
Phobius
SIGNAL_PEPTIDE_C_REGION
23 27 5 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
28 527 500 – –
MobiDBLite
mobidb-lite
50 108 59 – –
PANTHER
PTHR31375
77 229 153 8.50E-255 –
PANTHER
PTHR31375:SF46
77 229 153 8.50E-255 –
Gene3D
G3DSA:2.160.20.10
110 226 117 3.10E-129
IPR012334
SUPERFAMILY
SSF51126
112 222 111 2.77E-120
IPR011050
Pfam
PF00295
143 223 81 2.50E-08
IPR000743
SUPERFAMILY
SSF51126
258 525 268 2.77E-120
IPR011050
PANTHER
PTHR31375
259 527 269 8.50E-255 –
PANTHER
PTHR31375:SF46
259 527 269 8.50E-255 –
Pfam
PF00295
261 479 219 1.30E-68
IPR000743
Gene3D
G3DSA:2.160.20.10
262 517 256 3.10E-129
IPR012334
SMART
SM00710
294 320 27 28
IPR006626
SMART
SM00710
321 342 22 1700
IPR006626
SMART
SM00710
344 364 21 5100
IPR006626
ProSitePatterns
PS00502
351 364 14 –
IPR000743
SMART
SM00710
374 395 22 1.7
IPR006626
SMART
SM00710
403 424 22 7300
IPR006626

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004650
Molecular function Polygalacturonase activity Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.
Subterm of
GO:0005975
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj2g3v1414930.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1414930.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.