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Lj2g3v1415460.1

Overview

Field Value
Gene ID Lj2g3v1415460
Transcript ID Lj2g3v1415460.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: F-box protein At1g70590-like [Glycine max] gi|356497357|ref|XP_003517527.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF81383
42 87 46 3.66E-07
IPR001810
Gene3D
G3DSA:1.20.1280.50
48 83 36 8.20E-07 –
ProSiteProfiles
PS50181
49 101 53 8.729
IPR001810
Pfam
PF00646
52 86 35 1.30E-04
IPR001810
Gene3D
G3DSA:1.25.40.10
84 302 219 9.40E-50
IPR011990
SMART
SM00671
92 128 37 2.1
IPR006597
PANTHER
PTHR11102
95 331 237 2.60E-68 –
Pfam
PF08238
103 127 25 150
IPR006597
SUPERFAMILY
SSF81901
112 301 190 9.81E-40 –
SMART
SM00671
129 160 32 2.6
IPR006597
Pfam
PF08238
141 160 20 0.38
IPR006597
Pfam
PF08238
161 192 32 0.0041
IPR006597
SMART
SM00671
161 194 34 0.018
IPR006597
SMART
SM00671
195 230 36 1.50E-06
IPR006597
Pfam
PF08238
196 230 35 2.90E-06
IPR006597
SMART
SM00671
231 266 36 5.10E-05
IPR006597
Pfam
PF08238
231 266 36 1.40E-06
IPR006597
SMART
SM00671
267 298 32 240
IPR006597
Pfam
PF08238
273 297 25 180
IPR006597

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj2g3v1415460.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1415460.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.