Domain Predictions — View

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IPR006597

Source: InterPro

Description

IPR006597 is a Sel1-like repeat.

<p>Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway [[cite:PUB00007970]]. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 14

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0263569.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: expansin-A20-like [Cicer arietinum] gi\|502168738\|ref\|XP_004514456.1\|	Domains G3DSA:1.25.40.10 G3DSA:2.40.40.10 G3DSA:2.60.40.760 IPR002963 IPR006597 IPR007112 IPR007117 IPR007118 IPR009009 IPR011990 PF01357 PF03330 PF08238 PR01225 PR01226 PS50842 PS50843 PTHR31867 PTHR31867:SF7 SM00671 SM00837 SSF49590 SSF50685 SSF81901	24
Lj2g3v0661390.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: protein sel-1 homolog 2-like [Cicer arietinum] gi\|502138039\|ref\|XP_004503266.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:1.25.40.10 IPR006597 IPR011990 NON_CYTOPLASMIC_DOMAIN PF08238 PTHR11102 PTHR11102:SF84 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00671 SSF81901 SignalP-TM_GRAM_POSITIVE SignalP-noTM_EUK SignalP-noTM_GRAM_NEGATIVE TMhelix TRANSMEMBRANE mobidb-lite	20
Lj2g3v1415460.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: F-box protein At1g70590-like [Glycine max] gi\|356497357\|ref\|XP_003517527.1\|	Domains G3DSA:1.20.1280.50 G3DSA:1.25.40.10 IPR001810 IPR006597 IPR011990 PF00646 PF08238 PS50181 PTHR11102 SM00671 SSF81383 SSF81901	12
Lj4g3v3115030.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: protein sel-1 homolog 2-like [Cicer arietinum] gi\|502138039\|ref\|XP_004503266.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:1.25.40.10 IPR006597 IPR011990 NON_CYTOPLASMIC_DOMAIN PF08238 PTHR11102 PTHR11102:SF84 SM00671 SSF81901 TRANSMEMBRANE	11
Lj5g3v0803050.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Glycine max] gi\|356500631\|ref\|XP_003519135.1\|	Domains G3DSA:1.25.40.10 IPR001440 IPR006597 IPR011990 IPR013026 IPR019734 IPR029489 PF00515 PF13181 PF13424 PF13844 PS50005 PS50293 PTHR23083 PTHR23083:SF397 SM00028 SM00671 SSF48452 mobidb-lite	19
Lj6g3v0451100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Uncharacterized protein TCM_042415 [Theobroma cacao] gi\|508725746\|gb\|EOY17643.1\|	Domains G3DSA:1.25.40.10 IPR006597 IPR011990 PTHR36792 PTHR36792:SF2 SM00671 SSF81901 mobidb-lite	8
LotjaGi2g1v0269600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glucose-6-phosphate isomerase; TAIR: AT5G05360.1 hypothetical protein; Swiss-Prot: sp\|Q5UP92\|YL018_MIMIV Putative sel1-like repeat-containing protein L18; TrEMBL-Plants: tr\|A0A151RQX7\|A0A151RQX7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0269600	Domains G3DSA:1.25.40.10 IPR006597 IPR011990 PTHR36792 PTHR36792:SF7 SM00671 SSF81901 mobidb-lite	8
LotjaGi2g1v0324500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	F-box protein family; TAIR: AT1G70590.1 F-box family protein; Swiss-Prot: sp\|Q94C27\|FB84_ARATH F-box protein At1g70590; TrEMBL-Plants: tr\|A0A151TGY2\|A0A151TGY2_CAJCA F-box protein family; Found in the gene: LotjaGi2g1v0324500	Domains G3DSA:1.20.1280.50 G3DSA:1.25.40.10 IPR001810 IPR006597 IPR011990 IPR036047 PF00646 PF08238 PS50181 PTHR45088 PTHR45088:SF4 SM00671 SSF81383 SSF81901	14
LotjaGi3g1v0455600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Protein sel-1-like protein 1; TAIR: AT2G25570.1 binding protein; Swiss-Prot: sp\|P77234\|YBEQ_ECOLI Uncharacterized protein YbeQ; TrEMBL-Plants: tr\|V7CGF4\|V7CGF4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0455600	Domains G3DSA:1.25.40.10 IPR006597 IPR011990 PF08238 PTHR45500 SM00671 SSF81901	7
LotjaGi4g1v0464700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ERAD-associated E3 ubiquitin-protein ligase component HRD3A; TAIR: AT1G18260.1 HCP-like superfamily protein; Swiss-Prot: sp\|Q9LM25\|HRD3A_ARATH ERAD-associated E3 ubiquitin-protein ligase component HRD3A; TrEMBL-Plants: tr\|G7LE71\|G7LE71_MEDTR Sel1 repeat protein; Found in the gene: LotjaGi4g1v0464700	Domains G3DSA:1.25.40.10 IPR006597 IPR011990 NON_CYTOPLASMIC_DOMAIN PF08238 PTHR45084 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00671 SSF81901 SignalP-TM SignalP-noTM TMhelix mobidb-lite	16
LotjaGi4g1v0464700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ERAD-associated E3 ubiquitin-protein ligase component HRD3A; TAIR: AT1G18260.1 HCP-like superfamily protein; Swiss-Prot: sp\|Q9LM25\|HRD3A_ARATH ERAD-associated E3 ubiquitin-protein ligase component HRD3A; TrEMBL-Plants: tr\|G7LE71\|G7LE71_MEDTR Sel1 repeat protein; Found in the gene: LotjaGi4g1v0464700	Domains CYTOPLASMIC_DOMAIN G3DSA:1.25.40.10 IPR006597 IPR011990 NON_CYTOPLASMIC_DOMAIN PF08238 PTHR45084 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00671 SSF81901 SignalP-TM SignalP-noTM TMhelix TRANSMEMBRANE mobidb-lite	18
LotjaGi5g1v0099700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Photosystem I assembly protein Ycf3; TAIR: AT3G11540.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp\|O82039\|SPY_PETHY Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; TrEMBL-Plants: tr\|A0A151U3N8\|A0A151U3N8_CAJCA Putative UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; Found in the gene: LotjaGi5g1v0099700	Domains G3DSA:1.25.40.10 G3DSA:3.40.50.11380 G3DSA:3.40.50.2000 IPR001440 IPR006597 IPR011990 IPR013026 IPR019734 IPR029489 PF00515 PF13181 PF13424 PF13844 PS50005 PS50293 PTHR44835 PTHR44835:SF1 SM00028 SM00671 SSF48452 mobidb-lite	21
LotjaGi5g1v0099700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Photosystem I assembly protein Ycf3; TAIR: AT3G11540.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp\|O82039\|SPY_PETHY Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; TrEMBL-Plants: tr\|A0A151U3N8\|A0A151U3N8_CAJCA Putative UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; Found in the gene: LotjaGi5g1v0099700	Domains G3DSA:1.25.40.10 G3DSA:3.40.50.11380 G3DSA:3.40.50.2000 IPR001440 IPR006597 IPR011990 IPR013026 IPR019734 IPR029489 PF00515 PF13181 PF13424 PF13844 PS50005 PS50293 PTHR44835 PTHR44835:SF1 SM00028 SM00671 SSF48452	20
LotjaGi5g1v0099700.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Photosystem I assembly protein Ycf3; TAIR: AT3G11540.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp\|O82039\|SPY_PETHY Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; TrEMBL-Plants: tr\|A0A151U3N8\|A0A151U3N8_CAJCA Putative UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; Found in the gene: LotjaGi5g1v0099700	Domains G3DSA:1.25.40.10 G3DSA:3.40.50.11380 G3DSA:3.40.50.2000 IPR001440 IPR006597 IPR011990 IPR013026 IPR019734 IPR029489 PF00515 PF13181 PF13424 PF13844 PS50005 PS50293 PTHR44835 PTHR44835:SF1 SM00028 SM00671 SSF48452 mobidb-lite	21

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	7.14