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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1454960 |
| Transcript ID | Lj2g3v1454960.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | MscS-Like mechanosensitive ion channel MSCL8 [Medicago truncatula] gi|357485521|ref|XP_003613048.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 105 | 105 | – | – | |
| PANTHER | 2 | 530 | 529 | 0 | – | |
| PANTHER | 2 | 530 | 529 | 0 | – | |
| TMHMM | 106 | 128 | 23 | – | – | |
| Phobius | 106 | 129 | 24 | – | – | |
| Phobius | 130 | 149 | 20 | – | – | |
| Phobius | 150 | 168 | 19 | – | – | |
| Phobius | 169 | 187 | 19 | – | – | |
| Phobius | 188 | 206 | 19 | – | – | |
| Phobius | 207 | 237 | 31 | – | – | |
| Pfam | 237 | 443 | 207 | 3.50E-29 | ||
| Phobius | 238 | 256 | 19 | – | – | |
| Phobius | 257 | 261 | 5 | – | – | |
| Phobius | 262 | 281 | 20 | – | – | |
| SUPERFAMILY | 280 | 350 | 71 | 2.62E-08 | ||
| Phobius | 282 | 715 | 434 | – | – | |
| Gene3D | 295 | 348 | 54 | 1.10E-07 | – | |
| MobiDBLite | 493 | 660 | 168 | – | – | |
| MobiDBLite | 676 | 715 | 40 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj2g3v1454960.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1454960.1, powered by CORGI.
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