Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR010920
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 80 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.429s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0007429.2
n.a. PREDICTED: N-alpha-acetyltransferase 38, NatC auxiliary subunit [Vitis vinifera] gi|225454559|ref|XP_002263175.1| chr0 2893784 2897506 -
2 domain predictions
 –
Lj0g3v0068179.1
n.a. PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Cicer arietinum] gi|502165822|ref|XP_004513701.1| chr0 24375096 24376517 +
2 domain predictions
 –
Lj0g3v0090899.1
n.a. Small nuclear ribonucleoprotein-like protein [Medicago truncatula] gi|357521399|ref|XP_003630988.1| chr0 37579962 37582064 -
2 domain predictions
 –
Lj0g3v0130529.1
n.a. Small nuclear ribonucleoprotein Sm D1 [Medicago truncatula] gi|357440765|ref|XP_003590660.1| chr0 59218031 59221156 -
2 domain predictions
 –
Lj0g3v0164009.1
n.a. PREDICTED: mechanosensitive ion channel protein 10-like [Cicer arietinum] gi|502165208|ref|XP_004513470.1| chr0 77579573 77581239 -
2 domain predictions
 –
Lj0g3v0170419.1
n.a. PREDICTED: N-alpha-acetyltransferase 38, NatC auxiliary subunit [Vitis vinifera] gi|225454559|ref|XP_002263175.1| chr0 81540420 81543838 -
2 domain predictions
 –
Lj0g3v0204049.1
n.a. Small nuclear ribonucleoprotein-associated protein B [Medicago truncatula] gi|357494377|ref|XP_003617477.1| chr0 101182732 101187465 -
2 domain predictions
 –
Lj0g3v0215509.1
n.a. PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like isoform 1 [Solanum lycopersicum] gi|460368779|ref|XP_004230242.1| chr0 109214308 109215485 -
2 domain predictions
 –
Lj0g3v0230909.1
n.a. PREDICTED: probable small nuclear ribonucleoprotein G-like [Cicer arietinum] gi|502111908|ref|XP_004494202.1| chr0 119694106 119695674 +
2 domain predictions
 –
Lj0g3v0298839.1
n.a. PREDICTED: probable small nuclear ribonucleoprotein F [Glycine max] gi|356562363|ref|XP_003549441.1| chr0 155313531 155315616 +
2 domain predictions
 –
Lj0g3v0304109.1
n.a. SnRNP core Sm protein Sm-X5-like protein [Medicago truncatula] gi|357511085|ref|XP_003625831.1| chr0 158409208 158411596 -
2 domain predictions
 –
Lj1g3v1560060.1
n.a. MscS family inner membrane protein ynaI [Medicago truncatula] gi|357465255|ref|XP_003602909.1| chr1 18789013 18797651 +
2 domain predictions
 –
Lj1g3v1788130.1
n.a. PREDICTED: mechanosensitive ion channel protein 10-like [Cicer arietinum] gi|502132592|ref|XP_004501436.1| chr1 21370746 21374531 +
2 domain predictions
 –
Lj1g3v3609490.1
n.a. Small nuclear ribonucleoprotein family protein [Theobroma cacao] gi|508724807|gb|EOY16704.1| chr1 41617384 41618877 -
2 domain predictions
 –
Lj1g3v3977170.4
n.a. Small nuclear ribonucleoprotein-associated protein B [Medicago truncatula] gi|357447241|ref|XP_003593896.1| chr1 47212311 47213602 +
2 domain predictions
 –
Lj1g3v4590890.1
n.a. PREDICTED: mechanosensitive ion channel protein 10-like [Cicer arietinum] gi|502165208|ref|XP_004513470.1| chr1 54850318 54860995 -
2 domain predictions
 –
Lj1g3v4717490.1
n.a. PREDICTED: probable small nuclear ribonucleoprotein G [Glycine max] gi|356505386|ref|XP_003521472.1| chr1 56314597 56317613 -
2 domain predictions
 –
Lj2g3v1172610.1
n.a. PREDICTED: protein decapping 5-like [Cicer arietinum] gi|502094718|ref|XP_004490283.1| chr2 18644810 18650665 -
2 domain predictions
 –
Lj2g3v1454960.1
n.a. MscS-Like mechanosensitive ion channel MSCL8 [Medicago truncatula] gi|357485521|ref|XP_003613048.1| chr2 22886887 22895497 -
2 domain predictions
 –
Lj2g3v3133960.1
n.a. Small nuclear ribonucleoprotein-associated protein B [Medicago truncatula] gi|357494377|ref|XP_003617477.1| chr2 40503041 40503694 -
2 domain predictions
 –
Lj3g3v0478010.1
n.a. PREDICTED: U6 snRNA-associated Sm-like protein LSm7-like [Glycine max] gi|356512406|ref|XP_003524910.1| chr3 5458878 5462685 -
2 domain predictions
 –
Lj3g3v2576580.1
n.a. PREDICTED: U6 snRNA-associated Sm-like protein LSm1-like isoform X1 [Cicer arietinum] gi|502156536|ref|XP_004510523.1| chr3 31775233 31779312 -
2 domain predictions
 –
Lj3g3v2655630.1
n.a. Ataxin-2 [Medicago truncatula] gi|357454537|ref|XP_003597549.1| chr3 32308156 32314220 -
2 domain predictions
 –
Lj3g3v2988250.1
n.a. PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cicer arietinum] gi|502139973|ref|XP_004503997.1| chr3 36978533 36980037 -
2 domain predictions
 –
Lj4g3v0281060.1
n.a. PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Cucumis sativus] gi|449468622|ref|XP_004152020.1| chr4 3291480 3293319 +
2 domain predictions
 –
Lj4g3v1248000.1
n.a. PREDICTED: small nuclear ribonucleoprotein E-like [Glycine max] gi|356508935|ref|XP_003523208.1| chr4 18429622 18430697 -
2 domain predictions
 –
Lj4g3v2001930.1
n.a. PREDICTED: mechanosensitive ion channel protein 1, mitochondrial-like [Cicer arietinum] gi|502157089|ref|XP_004510754.1| chr4 27826573 27831664 -
2 domain predictions
 –
Lj4g3v2573940.1
n.a. PREDICTED: U6 snRNA-associated Sm-like protein LSm7-like [Glycine max] gi|356512406|ref|XP_003524910.1| chr4 34432912 34442316 -
2 domain predictions
 –
Lj4g3v2785700.1
n.a. Small nuclear ribonucleoprotein Sm D3 [Medicago truncatula] gi|357519697|ref|XP_003630137.1| chr4 37248001 37249684 +
2 domain predictions
 –
Lj4g3v3113400.1
n.a. PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like [Cucumis sativus] gi|449457536|ref|XP_004146504.1| chr4 41686383 41689800 -
2 domain predictions
 –
Lj5g3v0292810.1
n.a. PREDICTED: probable small nuclear ribonucleoprotein F [Glycine max] gi|356562363|ref|XP_003549441.1| chr5 2603352 2604954 +
2 domain predictions
 –
Lj5g3v0292810.2
n.a. PREDICTED: probable small nuclear ribonucleoprotein F [Glycine max] gi|356562363|ref|XP_003549441.1| chr5 2603352 2604630 +
2 domain predictions
 –
Lj5g3v0369990.1
n.a. MscS family inner membrane protein ynaI [Medicago truncatula] gi|357465255|ref|XP_003602909.1| chr5 3485366 3495953 +
2 domain predictions
 –
Lj5g3v0370010.1
n.a. PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like isoform X1 [Cicer arietinum] gi|502133071|ref|XP_004501641.1| chr5 3502606 3510776 +
2 domain predictions
 –
Lj5g3v0626530.1
n.a. PREDICTED: small nuclear ribonucleoprotein E-like [Glycine max] gi|356508935|ref|XP_003523208.1| chr5 8372113 8376371 -
2 domain predictions
 –
Lj5g3v0975430.1
n.a. Small nuclear ribonucleoprotein Sm D1 [Medicago truncatula] gi|357440765|ref|XP_003590660.1| chr5 14952840 14955236 +
2 domain predictions
 –
Lj5g3v1533380.1
n.a. PREDICTED: N-alpha-acetyltransferase 38, NatC auxiliary subunit-like [Cicer arietinum] gi|502163687|ref|XP_004512917.1| chr5 22447143 22450877 +
2 domain predictions
 –
Lj5g3v1631030.1
n.a. PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like [Cicer arietinum] gi|502112559|ref|XP_004494370.1| chr5 23647359 23649957 -
2 domain predictions
 –
Lj5g3v2258330.1
n.a. PREDICTED: mechanosensitive ion channel protein 6-like isoform X1 [Cicer arietinum] gi|502121167|ref|XP_004497211.1| chr5 32746626 32751047 -
2 domain predictions
 –
Lj6g3v1201410.1
n.a. PREDICTED: mechanosensitive ion channel protein 10-like [Cicer arietinum] gi|502165208|ref|XP_004513470.1| chr6 14917097 14921413 -
2 domain predictions
 –
Lj6g3v1946380.1
n.a. Small nuclear ribonucleoprotein-associated protein B [Medicago truncatula] gi|357447241|ref|XP_003593896.1| chr6 22195786 22197459 -
2 domain predictions
 –
LotjaGi1g1v0035700_LC.1
n.a. Small nuclear ribonucleoprotein-associated protein; TAIR: AT4G20440.1 small nuclear ribonucleoprotein associated protein B; Swiss-Prot: sp|Q9N1Q0|RSMB_MACEU Small nuclear ribonucleoprotein-associated protein B'; TrEMBL-Plants: tr|G7K3F8|G7K3F8_MEDTR Small nuclear ribonucleoprotein-associated protein; Found in the gene: LotjaGi1g1v0035700_LC LjG1.1_chr1 4938798 4967106 +
2 domain predictions
 –
LotjaGi1g1v0035700_LC.2
n.a. Small nuclear ribonucleoprotein-associated protein; TAIR: AT4G20440.1 small nuclear ribonucleoprotein associated protein B; Swiss-Prot: sp|Q9N1Q0|RSMB_MACEU Small nuclear ribonucleoprotein-associated protein B'; TrEMBL-Plants: tr|G7K3F8|G7K3F8_MEDTR Small nuclear ribonucleoprotein-associated protein; Found in the gene: LotjaGi1g1v0035700_LC LjG1.1_chr1 4938959 4939798 +
2 domain predictions
 –
LotjaGi1g1v0346900.1
n.a. Mechanosensitive ion channel-like protein; TAIR: AT1G58200.1 MSCS-like 3; Swiss-Prot: sp|Q8L7W1|MSL3_ARATH Mechanosensitive ion channel protein 3, chloroplastic; TrEMBL-Plants: tr|A0A151TSP1|A0A151TSP1_CAJCA MscS family inner membrane protein ynaI; Found in the gene: LotjaGi1g1v0346900 LjG1.1_chr1 81406303 81421187 +
2 domain predictions
 –
LotjaGi1g1v0346900.2
n.a. Mechanosensitive ion channel-like protein; TAIR: AT5G10490.1 MSCS-like 2; Swiss-Prot: sp|Q56X46|MSL2_ARATH Mechanosensitive ion channel protein 2, chloroplastic; TrEMBL-Plants: tr|G7J535|G7J535_MEDTR Mechanosensitive ion channel-like protein; Found in the gene: LotjaGi1g1v0346900 LjG1.1_chr1 81408272 81416878 +
2 domain predictions
 –
LotjaGi1g1v0347100.1
n.a. Mechanosensitive ion channel-like protein; TAIR: AT1G58200.1 MSCS-like 3; Swiss-Prot: sp|Q8L7W1|MSL3_ARATH Mechanosensitive ion channel protein 3, chloroplastic; TrEMBL-Plants: tr|G7J539|G7J539_MEDTR Mechanosensitive ion channel-like protein; Found in the gene: LotjaGi1g1v0347100 LjG1.1_chr1 81427428 81435894 +
2 domain predictions
 –
LotjaGi1g1v0370600.1
n.a. Mechanosensitive ion channel family protein; TAIR: AT5G12080.1 mechanosensitive channel of small conductance-like 10; Swiss-Prot: sp|Q9LYG9|MSL10_ARATH Mechanosensitive ion channel protein 10; TrEMBL-Plants: tr|K7KTA0|K7KTA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0370600 LjG1.1_chr1 84911114 84915716 +
2 domain predictions
 –
LotjaGi1g1v0598200.1
n.a. Small nuclear ribonucleoprotein; TAIR: AT1G76860.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9C6K5|LSM3B_ARATH Sm-like protein LSM3B; TrEMBL-Plants: tr|A0A0J8FV31|A0A0J8FV31_BETVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0598200 LjG1.1_chr1 113801273 113802775 -
2 domain predictions
 –
LotjaGi1g1v0728800.1
n.a. Small nuclear ribonucleoprotein Sm D1; TAIR: AT4G02840.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q3ZC10|SMD1_BOVIN Small nuclear ribonucleoprotein Sm D1; TrEMBL-Plants: tr|I3SRU7|I3SRU7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0728800 LjG1.1_chr1 130040223 130043950 -
2 domain predictions
 –
LotjaGi1g1v0728800.2
n.a. Small nuclear ribonucleoprotein Sm D1; TAIR: AT4G02840.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q3ZC10|SMD1_BOVIN Small nuclear ribonucleoprotein Sm D1; TrEMBL-Plants: tr|I3SRU7|I3SRU7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0728800 LjG1.1_chr1 130040967 130043683 -
2 domain predictions
 –