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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1550680 |
| Transcript ID | Lj2g3v1550680.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g19220, mitochondrial-like [Glycine max] gi|356495279|ref|XP_003516506.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 109 | 392 | 284 | 0 | – | |
| PANTHER | 109 | 392 | 284 | 0 | – | |
| ProSiteProfiles | 121 | 155 | 35 | 8.057 | ||
| Pfam | 125 | 151 | 27 | 0.039 | ||
| Gene3D | 131 | 184 | 54 | 3.60E-14 | ||
| Pfam | 154 | 181 | 28 | 0.11 | ||
| ProSiteProfiles | 187 | 221 | 35 | 5.141 | ||
| ProSiteProfiles | 222 | 256 | 35 | 8.484 | ||
| Pfam | 227 | 250 | 24 | 0.034 | ||
| Gene3D | 252 | 253 | 2 | 3.60E-14 | ||
| Pfam | 255 | 280 | 26 | 0.13 | ||
| ProSiteProfiles | 325 | 355 | 31 | 6.741 | ||
| Pfam | 330 | 352 | 23 | 0.017 | ||
| Pfam | 355 | 401 | 47 | 5.60E-08 | ||
| ProSiteProfiles | 356 | 390 | 35 | 9.372 | ||
| TIGRFAM | 358 | 392 | 35 | 4.20E-04 | ||
| ProSiteProfiles | 428 | 458 | 31 | 6.226 | ||
| PANTHER | 429 | 488 | 60 | 0 | – | |
| PANTHER | 429 | 488 | 60 | 0 | – | |
| Pfam | 433 | 453 | 21 | 0.038 | ||
| ProSiteProfiles | 459 | 493 | 35 | 10.424 | ||
| Pfam | 461 | 490 | 30 | 6.30E-07 | ||
| TIGRFAM | 461 | 490 | 30 | 0.0024 | ||
| Gene3D | 462 | 493 | 32 | 3.60E-14 | ||
| ProSiteProfiles | 561 | 591 | 31 | 7.607 | ||
| Pfam | 564 | 588 | 25 | 0.31 | ||
| ProSiteProfiles | 632 | 662 | 31 | 5.579 | ||
| ProSiteProfiles | 663 | 693 | 31 | 8.374 | ||
| TIGRFAM | 666 | 691 | 26 | 4.20E-04 | ||
| Pfam | 666 | 690 | 25 | 7.20E-05 | ||
| PANTHER | 690 | 939 | 250 | 0 | – | |
| PANTHER | 690 | 939 | 250 | 0 | – | |
| ProSiteProfiles | 695 | 729 | 35 | 6.939 | ||
| ProSiteProfiles | 730 | 760 | 31 | 7.662 | ||
| Gene3D | 731 | 788 | 58 | 3.60E-14 | ||
| Pfam | 735 | 756 | 22 | 1.2 | ||
| ProSiteProfiles | 761 | 795 | 35 | 11.257 | ||
| Pfam | 763 | 808 | 46 | 6.70E-10 | ||
| TIGRFAM | 764 | 794 | 31 | 9.80E-08 | ||
| ProSiteProfiles | 796 | 831 | 36 | 7.947 | ||
| TIGRFAM | 799 | 833 | 35 | 0.0014 | ||
| ProSiteProfiles | 832 | 862 | 31 | 5.908 | ||
| Gene3D | 892 | 920 | 29 | 3.60E-14 | ||
| ProSiteProfiles | 898 | 932 | 35 | 7.278 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj2g3v1550680.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1550680.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.