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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1574250 |
| Transcript ID | Lj2g3v1574250.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like [Cicer arietinum] gi|502161813|ref|XP_004512291.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 32 | 32 | – | – | |
| PANTHER | 1 | 570 | 570 | 0 | ||
| MobiDBLite | 1 | 27 | 27 | – | – | |
| PANTHER | 1 | 570 | 570 | 0 | – | |
| TMHMM | 30 | 52 | 23 | – | – | |
| Phobius | 33 | 52 | 20 | – | – | |
| Phobius | 53 | 72 | 20 | – | – | |
| TMHMM | 73 | 95 | 23 | – | – | |
| Phobius | 73 | 96 | 24 | – | – | |
| Phobius | 97 | 527 | 431 | – | – | |
| MobiDBLite | 134 | 157 | 24 | – | – | |
| SUPERFAMILY | 150 | 275 | 126 | 6.67E-106 | ||
| Gene3D | 152 | 227 | 76 | 6.90E-26 | ||
| ProSiteProfiles | 157 | 561 | 405 | 139.731 | ||
| TIGRFAM | 157 | 561 | 405 | 7.70E-162 | ||
| CDD | 158 | 561 | 404 | 0 | ||
| Pfam | 186 | 561 | 376 | 3.30E-145 | ||
| PRINTS | 217 | 238 | 22 | 4.00E-86 | ||
| Gene3D | 228 | 274 | 47 | 6.30E-94 | ||
| PRINTS | 244 | 264 | 21 | 4.00E-86 | ||
| SUPERFAMILY | 278 | 394 | 117 | 2.75E-46 | ||
| Gene3D | 278 | 393 | 116 | 5.10E-55 | ||
| PRINTS | 335 | 353 | 19 | 4.00E-86 | ||
| ProSitePatterns | 337 | 351 | 15 | – | ||
| PRINTS | 375 | 400 | 26 | 4.00E-86 | ||
| SUPERFAMILY | 392 | 550 | 159 | 6.67E-106 | ||
| Gene3D | 394 | 563 | 170 | 6.30E-94 | ||
| PRINTS | 426 | 452 | 27 | 4.00E-86 | ||
| PRINTS | 480 | 501 | 22 | 4.00E-86 | ||
| ProSitePatterns | 492 | 499 | 8 | – | ||
| Phobius | 528 | 553 | 26 | – | – | |
| ProSitePatterns | 546 | 559 | 14 | – | ||
| Phobius | 554 | 570 | 17 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydroxymethylglutaryl-CoA reductase (NADPH) activity | Catalysis of the reaction: (R)-mevalonate + CoA + 2 NADP(+) = (S)-3-hydroxy-3-methylglutaryl-CoA + 2 H(+) + 2 NADPH. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Isoprenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. | ||
| Biological process | Coenzyme A metabolic process | The chemical reactions and pathways involving coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester. | ||
| Molecular function | Oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP. | ||
| Molecular function | Coenzyme binding | Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of Lj2g3v1574250.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1574250.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.