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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1670940 |
| Transcript ID | Lj2g3v1670940.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g51320-like [Cicer arietinum] gi|502161442|ref|XP_004512166.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 18 | 18 | – | – | |
| MobiDBLite | 1 | 47 | 47 | – | – | |
| PANTHER | 37 | 381 | 345 | 7.00E-280 | – | |
| PANTHER | 37 | 381 | 345 | 7.00E-280 | – | |
| Gene3D | 111 | 235 | 125 | 7.70E-07 | ||
| ProSiteProfiles | 114 | 148 | 35 | 8.002 | ||
| Pfam | 117 | 138 | 22 | 0.62 | ||
| ProSiteProfiles | 149 | 183 | 35 | 6.632 | ||
| ProSiteProfiles | 184 | 214 | 31 | 6.686 | ||
| TIGRFAM | 189 | 216 | 28 | 0.003 | ||
| Pfam | 189 | 214 | 26 | 0.031 | ||
| ProSiteProfiles | 215 | 245 | 31 | 9.767 | ||
| TIGRFAM | 218 | 247 | 30 | 1.20E-04 | ||
| Pfam | 245 | 292 | 48 | 2.00E-09 | ||
| ProSiteProfiles | 246 | 280 | 35 | 10.907 | ||
| TIGRFAM | 248 | 281 | 34 | 6.50E-07 | ||
| ProSiteProfiles | 281 | 311 | 31 | 5.93 | ||
| ProSiteProfiles | 316 | 346 | 31 | 8.232 | ||
| Pfam | 321 | 347 | 27 | 2.30E-04 | ||
| TIGRFAM | 321 | 348 | 28 | 1.80E-04 | ||
| ProSiteProfiles | 347 | 381 | 35 | 9.734 | ||
| TIGRFAM | 349 | 376 | 28 | 2.70E-05 | ||
| Pfam | 349 | 376 | 28 | 9.30E-07 | ||
| PANTHER | 401 | 550 | 150 | 7.00E-280 | – | |
| PANTHER | 401 | 550 | 150 | 7.00E-280 | – | |
| ProSiteProfiles | 402 | 437 | 36 | 6.851 | ||
| Gene3D | 423 | 523 | 101 | 7.70E-07 | ||
| ProSiteProfiles | 438 | 472 | 35 | 5.821 | ||
| ProSiteProfiles | 509 | 543 | 35 | 5.382 | ||
| MobiDBLite | 587 | 614 | 28 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj2g3v1670940.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1670940.1, powered by CORGI.
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