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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1778740 |
| Transcript ID | Lj2g3v1778740.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: LOW QUALITY PROTEIN: probable polyol transporter 6-like [Glycine max] gi|356540747|ref|XP_003538846.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 381 | 381 | 4.90E-198 | – | |
| ProSiteProfiles | 1 | 358 | 358 | 28.115 | ||
| Phobius | 1 | 5 | 5 | – | – | |
| Phobius | 1 | 22 | 22 | – | – | |
| PRINTS | 1 | 20 | 20 | 4.60E-13 | ||
| PANTHER | 1 | 381 | 381 | 4.90E-198 | – | |
| CDD | 1 | 354 | 354 | 2.41E-08 | ||
| Gene3D | 2 | 92 | 91 | 7.80E-12 | – | |
| SUPERFAMILY | 2 | 113 | 112 | 1.83E-40 | ||
| Pfam | 2 | 368 | 367 | 3.70E-74 | ||
| TMHMM | 5 | 27 | 23 | – | – | |
| ProSitePatterns | 6 | 31 | 26 | – | ||
| Phobius | 6 | 17 | 12 | – | – | |
| Phobius | 18 | 22 | 5 | – | – | |
| Phobius | 23 | 37 | 15 | – | – | |
| TMHMM | 37 | 56 | 20 | – | – | |
| Phobius | 38 | 56 | 19 | – | – | |
| Phobius | 57 | 62 | 6 | – | – | |
| TMHMM | 63 | 85 | 23 | – | – | |
| Phobius | 63 | 84 | 22 | – | – | |
| Phobius | 85 | 164 | 80 | – | – | |
| SUPERFAMILY | 141 | 365 | 225 | 1.83E-40 | ||
| Phobius | 165 | 187 | 23 | – | – | |
| TMHMM | 165 | 187 | 23 | – | – | |
| Gene3D | 166 | 359 | 194 | 1.50E-13 | – | |
| Phobius | 188 | 231 | 44 | – | – | |
| ProSitePatterns | 221 | 238 | 18 | – | ||
| Phobius | 232 | 255 | 24 | – | – | |
| TMHMM | 232 | 254 | 23 | – | – | |
| Phobius | 256 | 266 | 11 | – | – | |
| Phobius | 267 | 292 | 26 | – | – | |
| TMHMM | 269 | 291 | 23 | – | – | |
| PRINTS | 270 | 291 | 22 | 4.60E-13 | ||
| Phobius | 293 | 303 | 11 | – | – | |
| PRINTS | 293 | 305 | 13 | 4.60E-13 | ||
| Phobius | 304 | 324 | 21 | – | – | |
| TMHMM | 304 | 326 | 23 | – | – | |
| Phobius | 325 | 329 | 5 | – | – | |
| TMHMM | 330 | 352 | 23 | – | – | |
| Phobius | 330 | 351 | 22 | – | – | |
| Phobius | 352 | 381 | 30 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj2g3v1778740.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1778740.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.