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Lj2g3v1850290.1

Overview

Field Value
Gene ID Lj2g3v1850290
Transcript ID Lj2g3v1850290.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: nodulation protein H-like [Cicer arietinum] gi|502152921|ref|XP_004509154.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 23 23 – –
PANTHER
PTHR32175
3 323 321 2.10E-237 –
PANTHER
PTHR32175:SF6
3 323 321 2.10E-237 –
Phobius
TRANSMEMBRANE
24 46 23 – –
Phobius
CYTOPLASMIC_DOMAIN
47 323 277 – –
Gene3D
G3DSA:3.40.50.300
100 121 22 5.60E-05
IPR027417
SUPERFAMILY
SSF52540
100 300 201 2.43E-15
IPR027417
Pfam
PF00685
102 281 180 2.00E-06
IPR000863
Gene3D
G3DSA:3.40.50.300
174 282 109 5.60E-05
IPR027417

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008146
Molecular function Sulfotransferase activity Catalysis of the transfer of a sulfate group from 3'-phosphoadenosine 5'-phosphosulfate to the hydroxyl group of an acceptor, producing the sulfated derivative and 3'-phosphoadenosine 5'-phosphate.
Subterm of

Genome browser

LORE1 insertions 23

Expression data

Expression pattern

Expression pattern of Lj2g3v1850290.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1850290.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.