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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1880870 |
| Transcript ID | Lj2g3v1880870.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: DNA polymerase alpha catalytic subunit-like [Cicer arietinum] gi|502160825|ref|XP_004511916.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 685 | 685 | 0 | ||
| PANTHER | 1 | 685 | 685 | 0 | – | |
| TIGRFAM | 159 | 1113 | 955 | 1.30E-236 | – | |
| SUPERFAMILY | 177 | 238 | 62 | 2.06E-63 | ||
| Pfam | 212 | 588 | 377 | 3.70E-27 | ||
| SUPERFAMILY | 267 | 435 | 169 | 2.06E-63 | ||
| Gene3D | 395 | 437 | 43 | 1.70E-35 | ||
| CDD | 396 | 646 | 251 | 7.37E-80 | – | |
| SMART | 396 | 899 | 504 | 9.80E-119 | ||
| Gene3D | 476 | 660 | 185 | 1.70E-35 | ||
| SUPERFAMILY | 476 | 683 | 208 | 2.06E-63 | ||
| Pfam | 648 | 1116 | 469 | 1.90E-121 | ||
| SUPERFAMILY | 679 | 685 | 7 | 7.79E-115 | – | |
| Gene3D | 724 | 772 | 49 | 8.60E-24 | ||
| PANTHER | 728 | 1216 | 489 | 0 | ||
| PANTHER | 728 | 1216 | 489 | 0 | – | |
| CDD | 731 | 1131 | 401 | 0 | – | |
| SUPERFAMILY | 732 | 1130 | 399 | 7.79E-115 | – | |
| PRINTS | 756 | 769 | 14 | 1.50E-11 | ||
| Gene3D | 797 | 848 | 52 | 1.60E-18 | – | |
| PRINTS | 832 | 844 | 13 | 1.50E-11 | ||
| Gene3D | 855 | 975 | 121 | 8.60E-24 | ||
| PRINTS | 885 | 893 | 9 | 1.50E-11 | ||
| ProSitePatterns | 887 | 895 | 9 | – | ||
| Coils | 913 | 933 | 21 | – | – | |
| Pfam | 1156 | 1354 | 199 | 1.70E-46 | ||
| PANTHER | 1240 | 1297 | 58 | 0 | – | |
| PANTHER | 1240 | 1297 | 58 | 0 | ||
| PANTHER | 1322 | 1358 | 37 | 0 | – | |
| PANTHER | 1322 | 1358 | 37 | 0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-directed DNA polymerase activity | Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group. | ||
| Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. |
Expression pattern of Lj2g3v1880870.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1880870.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.