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Lj2g3v1915590.2

Overview

Field Value
Gene ID Lj2g3v1915590
Transcript ID Lj2g3v1915590.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description ADP-ribosylation factor [Medicago truncatula] gi|357482765|ref|XP_003611669.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11711:SF184
1 182 182 1.10E-142 –
PANTHER
PTHR11711
1 182 182 1.10E-142 –
SMART
SM00178
1 177 177 4.90E-27 –
SMART
SM00177
1 181 181 7.70E-124 –
Pfam
PF00025
10 177 168 2.00E-77
IPR006689
ProSiteProfiles
PS51417
11 177 167 24.358
IPR024156
SUPERFAMILY
SSF52540
15 179 165 2.73E-56
IPR027417
TIGRFAM
TIGR00231
16 139 124 4.50E-23
IPR005225
Gene3D
G3DSA:3.40.50.300
17 179 163 1.40E-71
IPR027417
SMART
SM00175
18 180 163 0.0033 –
CDD
cd04150
18 176 159 2.14E-117 –
PRINTS
PR00328
19 42 24 1.90E-20
IPR006689
PRINTS
PR00328
47 71 25 1.90E-20
IPR006689
PRINTS
PR00328
74 99 26 1.90E-20
IPR006689
PRINTS
PR00328
119 140 22 1.90E-20
IPR006689

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj2g3v1915590.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1915590.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.