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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1963040 |
| Transcript ID | Lj2g3v1963040.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Ribonuclease [Medicago truncatula] gi|357453661|ref|XP_003597111.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | – | – | |
| PANTHER | 67 | 594 | 528 | 0 | – | |
| PANTHER | 67 | 594 | 528 | 0 | – | |
| SUPERFAMILY | 197 | 354 | 158 | 5.58E-21 | ||
| ProSiteProfiles | 199 | 341 | 143 | 14.559 | ||
| CDD | 227 | 361 | 135 | 7.49E-26 | ||
| Gene3D | 227 | 353 | 127 | 2.00E-14 | ||
| SMART | 227 | 364 | 138 | 2.40E-23 | ||
| SUPERFAMILY | 459 | 585 | 127 | 3.14E-13 | ||
| Gene3D | 460 | 584 | 125 | 4.00E-11 | ||
| CDD | 462 | 584 | 123 | 7.08E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ribonuclease III activity | Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of Lj2g3v1963040.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1963040.1, powered by CORGI.
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