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RIBOc
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Ribonuclease III activity | Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt. | ||
Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Transcript | Name | Description | Predicted domains | Domain count |
---|---|---|---|---|
– | PREDICTED: dicer-like protein 4-like [Glycine max] gi|356565129|ref|XP_003550797.1| | 40 | ||
– | PREDICTED: dicer-like protein 4-like [Glycine max] gi|356565129|ref|XP_003550797.1| | 40 | ||
– | PREDICTED: mini-ribonuclease 3-like isoform X2 [Cicer arietinum] gi|502081294|ref|XP_004486823.1| | 13 | ||
– | Ribonuclease III family protein [Theobroma cacao] gi|508699738|gb|EOX91634.1| | 11 | ||
– | PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 3a-like [Cicer arietinum] gi|502132552|ref|XP_004501416.1| | 38 | ||
– | PREDICTED: endoribonuclease Dicer homolog 2-like [Glycine max] gi|356571230|ref|XP_003553782.1| | 11 | ||
– | PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 3a-like [Cicer arietinum] gi|502132552|ref|XP_004501416.1| | 29 | ||
– | Ribonuclease [Medicago truncatula] gi|357453661|ref|XP_003597111.1| | 9 | ||
– | PREDICTED: ribonuclease 3-like protein 2-like [Cicer arietinum] gi|502099207|ref|XP_004491416.1| | 17 | ||
– | PREDICTED: mini-ribonuclease 3-like isoform X2 [Cicer arietinum] gi|502081294|ref|XP_004486823.1| | 14 | ||
– | Ribonuclease [Medicago truncatula] gi|357477313|ref|XP_003608942.1| | 14 | ||
– | PREDICTED: ribonuclease 3-like protein 2-like [Cicer arietinum] gi|502099207|ref|XP_004491416.1| | 12 | ||
– | PREDICTED: endoribonuclease Dicer homolog 2-like [Glycine max] gi|356533095|ref|XP_003535104.1| | 11 | ||
– | PREDICTED: endoribonuclease Dicer homolog 2-like [Glycine max] gi|356532427|ref|XP_003534774.1| | 10 | ||
– | Ribonuclease 3-like protein 3; TAIR: AT3G20420.1 RNAse THREE-like protein 2; Swiss-Prot: sp|Q9LTQ0|RTL2_ARATH Ribonuclease 3-like protein 2; TrEMBL-Plants: tr|A0A1J7IPZ1|A0A1J7IPZ1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0026400 | 18 | ||
– | Dicer-like protein 3; TAIR: AT3G43920.2 dicer-like 3; Swiss-Prot: sp|Q5N870|DCL3A_ORYSJ Endoribonuclease Dicer homolog 3a; TrEMBL-Plants: tr|K7KIB7|K7KIB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0372300 | 41 | ||
– | Ribonuclease 3-like protein 3; TAIR: AT3G03300.1 dicer-like 2; Swiss-Prot: sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2; TrEMBL-Plants: tr|A0A151TUM2|A0A151TUM2_CAJCA Endoribonuclease Dicer isogeny 2a; Found in the gene: LotjaGi1g1v0791500 | 13 | ||
– | Endoribonuclease Dicer-like protein 3; TAIR: AT1G01040.1 dicer-like 1; Swiss-Prot: sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1; TrEMBL-Plants: tr|K7N0F5|K7N0F5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0798000 | 44 | ||
– | Ribonuclease 3-like protein 3; TAIR: AT1G01040.1 dicer-like 1; Swiss-Prot: sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1; TrEMBL-Plants: tr|A0A072U4N5|A0A072U4N5_MEDTR Endoribonuclease dicer-like protein; Found in the gene: LotjaGi1g1v0798000 | 18 | ||
– | Ribonuclease 3-like protein 3; TAIR: AT1G01040.1 dicer-like 1; Swiss-Prot: sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1; TrEMBL-Plants: tr|A0A072U4N5|A0A072U4N5_MEDTR Endoribonuclease dicer-like protein; Found in the gene: LotjaGi1g1v0798000 | 18 | ||
– | Endoribonuclease Dicer-like protein 3; TAIR: AT1G01040.1 dicer-like 1; Swiss-Prot: sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1; TrEMBL-Plants: tr|K7N0F5|K7N0F5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0798000 | 44 | ||
– | Endoribonuclease Dicer-like protein 3; TAIR: AT1G01040.1 dicer-like 1; Swiss-Prot: sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1; TrEMBL-Plants: tr|K7N0F5|K7N0F5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0798000 | 44 | ||
– | Ribonuclease 3; TAIR: AT4G37510.1 Ribonuclease III family protein; Swiss-Prot: sp|Q9SZV0|RNC1_ARATH Ribonuclease III domain-containing protein RNC1, chloroplastic; TrEMBL-Plants: tr|A0A151SCA9|A0A151SCA9_CAJCA Ribonuclease 3; Found in the gene: LotjaGi2g1v0407000 | 10 | ||
– | Ribonuclease 3; TAIR: AT4G37510.1 Ribonuclease III family protein; Swiss-Prot: sp|Q9SZV0|RNC1_ARATH Ribonuclease III domain-containing protein RNC1, chloroplastic; TrEMBL-Plants: tr|A0A151SCA9|A0A151SCA9_CAJCA Ribonuclease 3; Found in the gene: LotjaGi2g1v0407000 | 7 | ||
– | Mini-ribonuclease 3; TAIR: AT1G55140.1 Ribonuclease III family protein; Swiss-Prot: sp|P74327|MRNC_SYNY3 Mini-ribonuclease 3; TrEMBL-Plants: tr|A0A0S3SFS1|A0A0S3SFS1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0025300 | 14 | ||
– | Ribonuclease 3; TAIR: AT4G37510.1 Ribonuclease III family protein; Swiss-Prot: sp|Q9SZV0|RNC1_ARATH Ribonuclease III domain-containing protein RNC1, chloroplastic; TrEMBL-Plants: tr|A0A0S3R594|A0A0S3R594_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0097200 | 9 | ||
– | Ribonuclease 3; TAIR: AT4G37510.1 Ribonuclease III family protein; Swiss-Prot: sp|A6YSL1|RNC1_MAIZE Ribonuclease III domain-containing protein RNC1, chloroplastic; TrEMBL-Plants: tr|G7JCT8|G7JCT8_MEDTR Ribonuclease III domain protein; Found in the gene: LotjaGi4g1v0097200 | 7 | ||
– | Ribonuclease 3; TAIR: AT1G24450.1 Ribonuclease III family protein; Swiss-Prot: sp|Q9FYL8|NFD2_ARATH Protein NUCLEAR FUSION DEFECTIVE 2; TrEMBL-Plants: tr|I3T487|I3T487_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0239100 | 16 | ||
– | Ribonuclease 3; TAIR: AT1G24450.1 Ribonuclease III family protein; Swiss-Prot: sp|Q9FYL8|NFD2_ARATH Protein NUCLEAR FUSION DEFECTIVE 2; TrEMBL-Plants: tr|I3T487|I3T487_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0239400 | 16 | ||
– | Ribonuclease 3; TAIR: AT1G24450.1 Ribonuclease III family protein; Swiss-Prot: sp|Q9FYL8|NFD2_ARATH Protein NUCLEAR FUSION DEFECTIVE 2; TrEMBL-Plants: tr|I3T487|I3T487_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0239400 | 16 | ||
– | Ribonuclease 3; TAIR: AT1G24450.1 Ribonuclease III family protein; Swiss-Prot: sp|Q9FYL8|NFD2_ARATH Protein NUCLEAR FUSION DEFECTIVE 2; TrEMBL-Plants: tr|I3T487|I3T487_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0239400 | 17 | ||
– | Dicer-like 3; TAIR: AT5G20320.1 dicer-like 4; Swiss-Prot: sp|P84634|DCL4_ARATH Dicer-like protein 4; TrEMBL-Plants: tr|K7MKZ2|K7MKZ2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0283700 | 45 | ||
– | Ribonuclease 3-like protein 3; TAIR: AT3G20420.1 RNAse THREE-like protein 2; Swiss-Prot: sp|Q9LTQ0|RTL2_ARATH Ribonuclease 3-like protein 2; TrEMBL-Plants: tr|A0A1J7IPZ1|A0A1J7IPZ1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0164100 | 13 | ||
– | Ribonuclease 3-like protein 3; TAIR: AT3G20420.1 RNAse THREE-like protein 2; Swiss-Prot: sp|Q9LTQ0|RTL2_ARATH Ribonuclease 3-like protein 2; TrEMBL-Plants: tr|A0A1J7IPZ1|A0A1J7IPZ1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0164100 | 13 | ||
– | Endoribonuclease Dicer-like protein 3; TAIR: AT3G03300.1 dicer-like 2; Swiss-Prot: sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2; TrEMBL-Plants: tr|I1L0G0|I1L0G0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0269600 | 37 | ||
– | Endoribonuclease Dicer-like protein 3; TAIR: AT3G03300.1 dicer-like 2; Swiss-Prot: sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2; TrEMBL-Plants: tr|I1L0G0|I1L0G0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0269600 | 37 | ||
– | Ribonuclease 3-like protein 3; TAIR: AT3G03300.4 dicer-like 2; Swiss-Prot: sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2; TrEMBL-Plants: tr|A0A1J7HMM6|A0A1J7HMM6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0269800_LC | 10 |
A list of co-occurring predicted domains within the L. japonicus gene space:
Predicted domain | Source | Observations | Saturation (%) |
---|---|---|---|
cd00593 | CDD | 1 | 2.70 |