Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj2g3v1968200.1

Overview

Field Value
Gene ID Lj2g3v1968200
Transcript ID Lj2g3v1968200.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: pentatricopeptide repeat-containing protein At3g02650, mitochondrial-like [Cicer arietinum] gi|502134331|ref|XP_004502080.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24015:SF751
27 61 35 2.40E-186 –
PANTHER
PTHR24015
27 61 35 2.40E-186 –
PANTHER
PTHR24015:SF751
82 112 31 2.40E-186 –
PANTHER
PTHR24015
82 112 31 2.40E-186 –
PANTHER
PTHR24015:SF751
194 553 360 2.40E-186 –
PANTHER
PTHR24015
194 553 360 2.40E-186 –
ProSiteProfiles
PS51375
217 251 35 7.717
IPR002885
ProSiteProfiles
PS51375
252 286 35 7.399
IPR002885
Gene3D
G3DSA:1.25.40.10
252 340 89 8.10E-04
IPR011990
ProSiteProfiles
PS51375
287 321 35 7.256
IPR002885
SUPERFAMILY
SSF81901
301 492 192 2.54E-05 –
ProSiteProfiles
PS51375
358 392 35 8.298
IPR002885
ProSiteProfiles
PS51375
393 427 35 9.657
IPR002885
Pfam
PF13041
394 440 47 1.30E-09
IPR002885
TIGRFAM
TIGR00756
396 429 34 3.20E-05
IPR002885
ProSiteProfiles
PS51375
428 462 35 9.504
IPR002885
TIGRFAM
TIGR00756
430 460 31 0.0012
IPR002885
Gene3D
G3DSA:1.25.40.10
431 488 58 8.10E-04
IPR011990
ProSiteProfiles
PS51375
463 497 35 12.496
IPR002885
TIGRFAM
TIGR00756
465 498 34 4.50E-08
IPR002885
Pfam
PF01535
465 495 31 6.50E-08
IPR002885
ProSiteProfiles
PS51375
498 533 36 8.758
IPR002885

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj2g3v1968200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1968200.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.