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Lj2g3v1984020.1

Overview

Field Value
Gene ID Lj2g3v1984020
Transcript ID Lj2g3v1984020.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: homeobox-leucine zipper protein HAT22-like [Glycine max] gi|356541549|ref|XP_003539237.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
23 59 37 – –
PANTHER
PTHR24326
67 261 195 1.30E-122 –
PANTHER
PTHR24326:SF252
67 261 195 1.30E-122 –
Gene3D
G3DSA:1.10.10.60
111 174 64 7.20E-18
IPR009057
ProSiteProfiles
PS50071
120 180 61 17.621
IPR001356
SMART
SM00389
122 184 63 1.90E-15
IPR001356
SUPERFAMILY
SSF46689
122 188 67 1.97E-18
IPR009057
Pfam
PF00046
124 178 55 2.90E-16
IPR001356
CDD
cd00086
124 181 58 2.42E-16 –
ProSitePatterns
PS00027
155 178 24 –
IPR017970
Pfam
PF02183
180 214 35 8.30E-10
IPR003106
SMART
SM00340
180 223 44 1.10E-24
IPR003106
Coils
Coil
186 216 31 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj2g3v1984020.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1984020.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.