Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj2g3v1988980.1

Overview

Field Value
Gene ID Lj2g3v1988980
Transcript ID Lj2g3v1988980.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: DNA repair endonuclease UVH1-like [Glycine max] gi|356541275|ref|XP_003539104.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10150
1 956 956 0 –
MobiDBLite
mobidb-lite
341 372 32 – –
Coils
Coil
392 416 25 – –
MobiDBLite
mobidb-lite
533 571 39 – –
SUPERFAMILY
SSF52980
722 860 139 2.17E-35
IPR011335
Gene3D
G3DSA:3.40.50.10130
722 871 150 7.20E-50
IPR020819
SMART
SM00891
725 805 81 2.10E-24
IPR006166
Pfam
PF02732
728 858 131 8.80E-22
IPR006166
SUPERFAMILY
SSF47781
887 951 65 3.19E-12
IPR010994

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0004518
Molecular function Nuclease activity Catalysis of the hydrolysis of ester linkages within nucleic acids.
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj2g3v1988980.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1988980.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.