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Lj2g3v2002130.1

Overview

Field Value
Gene ID Lj2g3v2002130
Transcript ID Lj2g3v2002130.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: L-lactate dehydrogenase A-like [Glycine max] gi|356497151|ref|XP_003517426.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11540:SF3
10 348 339 6.90E-207 –
PANTHER
PTHR11540
10 348 339 6.90E-207
IPR001557
Gene3D
G3DSA:3.40.50.720
23 179 157 3.30E-59
IPR016040
SUPERFAMILY
SSF51735
23 177 155 2.39E-65
IPR016040
PIRSF
PIRSF000102
34 350 317 1.60E-102
IPR001557
CDD
cd05293
35 347 313 2.02E-175 –
Hamap
MF_00488
37 349 313 37.106
IPR011304
Pfam
PF00056
38 177 140 1.50E-43
IPR001236
PRINTS
PR00086
39 63 25 1.90E-54
IPR001557
TIGRFAM
TIGR01771
42 341 300 3.70E-116
IPR011304
PRINTS
PR00086
64 88 25 1.90E-54
IPR001557
PRINTS
PR00086
151 171 21 1.90E-54
IPR001557
PRINTS
PR00086
175 193 19 1.90E-54
IPR001557
SUPERFAMILY
SSF56327
178 348 171 3.75E-54
IPR015955
Gene3D
G3DSA:3.90.110.10
180 348 169 8.00E-61
IPR015955
Pfam
PF02866
180 343 164 1.70E-24
IPR022383
PRINTS
PR00086
205 218 14 1.90E-54
IPR001557
ProSitePatterns
PS00064
207 213 7 –
IPR018177

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004459
Molecular function L-lactate dehydrogenase activity Catalysis of the reaction: (S)-lactate + NAD+ = pyruvate + NADH + H+.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0005975
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Subterm of
GO:0016491
Molecular function Oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
Subterm of
GO:0016616
Molecular function Oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
Subterm of
GO:0019752
Biological process Carboxylic acid metabolic process The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-).
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj2g3v2002130.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v2002130.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.