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Lj2g3v2083370.1

Overview

Field Value
Gene ID Lj2g3v2083370
Transcript ID Lj2g3v2083370.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: calcium-dependent protein kinase 3-like isoform 1 [Glycine max] gi|356539541|ref|XP_003538256.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24349:SF95
1 399 399 0 –
SMART
SM00220
1 207 207 3.40E-58
IPR000719
ProSiteProfiles
PS50011
1 207 207 40.004
IPR000719
PANTHER
PTHR24349
1 399 399 0 –
CDD
cd05117
1 206 206 2.28E-105 –
Gene3D
G3DSA:3.30.200.20
1 45 45 1.20E-12 –
Pfam
PF00069
2 207 206 1.90E-56
IPR000719
SUPERFAMILY
SSF56112
2 221 220 9.85E-67
IPR011009
Gene3D
G3DSA:1.10.510.10
46 215 170 2.10E-59 –
ProSitePatterns
PS00108
69 81 13 –
IPR008271
Gene3D
G3DSA:1.10.238.10
240 387 148 6.20E-46
IPR011992
SUPERFAMILY
SSF47473
245 386 142 6.68E-47
IPR011992
ProSiteProfiles
PS50222
249 284 36 14.681
IPR002048
SMART
SM00054
253 281 29 1.20E-05
IPR002048
Pfam
PF13499
254 314 61 5.90E-11
IPR002048
CDD
cd00051
254 313 60 1.48E-15
IPR002048
ProSitePatterns
PS00018
262 274 13 –
IPR018247
ProSiteProfiles
PS50222
285 320 36 11.026
IPR002048
SMART
SM00054
289 317 29 0.0097
IPR002048
ProSiteProfiles
PS50222
321 356 36 14.82
IPR002048
Pfam
PF13499
324 386 63 2.70E-13
IPR002048
SMART
SM00054
325 353 29 0.002
IPR002048
CDD
cd00051
328 386 59 7.90E-18
IPR002048
ProSitePatterns
PS00018
334 346 13 –
IPR018247
ProSiteProfiles
PS50222
357 391 35 13.091
IPR002048
SMART
SM00054
360 388 29 1.80E-07
IPR002048
ProSitePatterns
PS00018
369 381 13 –
IPR018247

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004672
Molecular function Protein kinase activity Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
Subterm of
GO:0005509
Molecular function Calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006468
Biological process Protein phosphorylation The process of introducing a phosphate group on to a protein.
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj2g3v2083370.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v2083370.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.