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Lj2g3v2089810.1

Overview

Field Value
Gene ID Lj2g3v2089810
Transcript ID Lj2g3v2089810.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: RNA-binding protein 8A-like [Glycine max] gi|356497345|ref|XP_003517521.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23139
1 182 182 1.40E-70 –
MobiDBLite
mobidb-lite
1 67 67 – –
PRINTS
PR01738
30 42 13 1.90E-17
IPR008111
Gene3D
G3DSA:3.30.70.330
67 157 91 5.10E-22
IPR012677
PRINTS
PR01738
67 81 15 1.90E-17
IPR008111
SUPERFAMILY
SSF54928
69 180 112 1.05E-26
IPR012677
CDD
cd12324
70 157 88 9.36E-61
IPR033744
ProSiteProfiles
PS50102
76 154 79 16.006
IPR000504
SMART
SM00360
77 150 74 4.10E-19
IPR000504
Pfam
PF00076
78 147 70 6.10E-16
IPR000504
PRINTS
PR01738
123 139 17 1.90E-17
IPR008111
PRINTS
PR01738
141 153 13 1.90E-17
IPR008111
MobiDBLite
mobidb-lite
162 182 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0003729
Molecular function MRNA binding Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0006396
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Subterm of
Part of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj2g3v2089810.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v2089810.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.