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| Field | Value |
|---|---|
| Gene ID | Lj2g3v2102980 |
| Transcript ID | Lj2g3v2102980.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357499777|ref|XP_003620177.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 287 | 287 | 5.70E-157 | – | |
| PANTHER | 1 | 287 | 287 | 5.70E-157 | – | |
| Pfam | 5 | 36 | 32 | 4.10E-11 | ||
| ProSiteProfiles | 9 | 43 | 35 | 11.992 | ||
| TIGRFAM | 11 | 45 | 35 | 5.20E-08 | ||
| Gene3D | 18 | 282 | 265 | 1.50E-06 | ||
| Pfam | 43 | 92 | 50 | 2.10E-18 | ||
| ProSiteProfiles | 44 | 78 | 35 | 12.003 | ||
| TIGRFAM | 46 | 80 | 35 | 9.80E-09 | ||
| ProSiteProfiles | 79 | 113 | 35 | 12.934 | ||
| TIGRFAM | 82 | 115 | 34 | 2.20E-11 | ||
| Pfam | 113 | 162 | 50 | 7.90E-21 | ||
| ProSiteProfiles | 114 | 148 | 35 | 13.822 | ||
| TIGRFAM | 116 | 150 | 35 | 4.80E-11 | ||
| ProSiteProfiles | 149 | 183 | 35 | 12.704 | ||
| TIGRFAM | 151 | 185 | 35 | 1.30E-09 | ||
| Pfam | 180 | 209 | 30 | 4.30E-11 | ||
| ProSiteProfiles | 184 | 218 | 35 | 11.389 | ||
| TIGRFAM | 186 | 219 | 34 | 7.70E-05 | ||
| ProSiteProfiles | 219 | 253 | 35 | 13.691 | ||
| Pfam | 219 | 265 | 47 | 4.20E-15 | ||
| TIGRFAM | 222 | 255 | 34 | 9.00E-12 | ||
| ProSiteProfiles | 254 | 287 | 34 | 11.257 | ||
| TIGRFAM | 256 | 286 | 31 | 2.70E-05 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj2g3v2102980.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v2102980.3, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.