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| Field | Value |
|---|---|
| Gene ID | Lj2g3v2103070 |
| Transcript ID | Lj2g3v2103070.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g71490-like [Glycine max] gi|356536685|ref|XP_003536866.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 58 | 58 | 3.90E-276 | – | |
| PANTHER | 1 | 58 | 58 | 3.90E-276 | – | |
| ProSiteProfiles | 5 | 39 | 35 | 11.805 | ||
| Pfam | 7 | 37 | 31 | 2.60E-08 | ||
| TIGRFAM | 7 | 38 | 32 | 1.80E-08 | ||
| Gene3D | 7 | 136 | 130 | 4.30E-04 | ||
| ProSiteProfiles | 40 | 70 | 31 | 8.462 | ||
| Pfam | 43 | 69 | 27 | 0.0011 | ||
| PANTHER | 93 | 420 | 328 | 3.90E-276 | – | |
| PANTHER | 93 | 420 | 328 | 3.90E-276 | – | |
| ProSiteProfiles | 109 | 139 | 31 | 7.158 | ||
| Pfam | 114 | 141 | 28 | 2.00E-05 | ||
| TIGRFAM | 114 | 141 | 28 | 1.90E-04 | ||
| ProSiteProfiles | 140 | 174 | 35 | 12.036 | ||
| TIGRFAM | 142 | 175 | 34 | 1.20E-07 | ||
| Pfam | 142 | 183 | 42 | 7.70E-08 | ||
| Gene3D | 206 | 281 | 76 | 2.20E-06 | ||
| ProSiteProfiles | 211 | 241 | 31 | 9.098 | ||
| Pfam | 215 | 238 | 24 | 6.10E-04 | ||
| TIGRFAM | 215 | 240 | 26 | 4.90E-04 | ||
| Pfam | 242 | 289 | 48 | 1.90E-09 | ||
| ProSiteProfiles | 242 | 276 | 35 | 11.63 | ||
| TIGRFAM | 244 | 277 | 34 | 1.70E-07 | ||
| ProSiteProfiles | 277 | 312 | 36 | 6.588 | ||
| ProSiteProfiles | 313 | 347 | 35 | 6.27 | ||
| Gene3D | 317 | 400 | 84 | 2.20E-06 | ||
| Pfam | 317 | 340 | 24 | 0.56 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj2g3v2103070.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v2103070.1, powered by CORGI.
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