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| Field | Value |
|---|---|
| Gene ID | Lj2g3v2124230 |
| Transcript ID | Lj2g3v2124230.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Far upstream element-binding protein [Medicago truncatula] gi|357481253|ref|XP_003610912.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 210 | 210 | – | – | |
| PANTHER | 127 | 440 | 314 | 9.50E-96 | – | |
| PANTHER | 127 | 440 | 314 | 9.50E-96 | – | |
| SUPERFAMILY | 204 | 280 | 77 | 2.05E-14 | ||
| SMART | 205 | 278 | 74 | 7.70E-14 | ||
| ProSiteProfiles | 206 | 273 | 68 | 16.688 | ||
| Gene3D | 207 | 279 | 73 | 2.80E-17 | ||
| Pfam | 209 | 274 | 66 | 9.90E-15 | ||
| CDD | 210 | 272 | 63 | 5.03E-13 | – | |
| SUPERFAMILY | 300 | 378 | 79 | 1.27E-18 | ||
| SMART | 301 | 375 | 75 | 4.60E-18 | ||
| ProSiteProfiles | 302 | 370 | 69 | 18.638 | ||
| Gene3D | 303 | 375 | 73 | 2.10E-21 | ||
| CDD | 305 | 371 | 67 | 4.94E-18 | – | |
| Pfam | 305 | 372 | 68 | 9.40E-19 | ||
| MobiDBLite | 375 | 731 | 357 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of Lj2g3v2124230.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v2124230.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.