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IPR004088

Source: InterPro

Description

IPR004088 is a K Homology domain, type 1.

<p>The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins [[cite:PUB00005188]]. It has been shown to bind RNA [[cite:PUB00005961], [cite:PUB00005962]]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for<i>in vitro</i>RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently [[cite:PUB00005188]].</p> <p>According to structural [[cite:PUB00005961], [cite:PUB00005962], [cite:PUB00007305]] analysis the KH domain can be separated in two groups. The first group or type-1 contain a β-α-α-β-β-α structure, whereas in the type-2 the two last β-sheet are located in the N-terminal part of the domain (α-β-β-α-α-β). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helices 1 and 2 in type-1 and between helices 2 and 3 in type-2. Proteins known to contain a type-1 KH domain include bacterial polyribonucleotide nucleotidyltransferase ([ec:2.7.7.8]); vertebrate Fragile X messenger ribonucleoprotein 1 (FMR1); eukaryotic heterogeneous nuclear ribonucleoprotein K (hnRNP K), one of at least 20 major proteins that are part of hnRNP particles in mammalian cells; mammalian poly(rC) binding proteins; Artemia salina glycine-rich protein GRP33; yeast PAB1-binding protein 2 (PBP2); vertebrate vigilin; and human high-density lipoprotein binding protein (HDL-binding protein).</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of

Associated Lotus transcripts 124

Transcript Name Description Predicted domains Domain count
Lj0g3v0166159.1
– PREDICTED: ribosomal RNA assembly protein mis3-like [Glycine max] gi|356501320|ref|XP_003519473.1|
Domains
7
Lj0g3v0213029.1
– KH domain-containing protein [Medicago truncatula] gi|357491547|ref|XP_003616061.1|
Domains
13
Lj0g3v0243119.1
– PREDICTED: LOW QUALITY PROTEIN: poly(rC)-binding protein 3-like [Cucumis sativus] gi|449463577|ref|XP_004149510.1|
Domains
10
Lj0g3v0317579.1
– PREDICTED: far upstream element-binding protein 2-like [Cicer arietinum] gi|502132673|ref|XP_004501474.1|
Domains
10
Lj1g3v0986640.1
– PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356516077|ref|XP_003526723.1|
Domains
12
Lj1g3v1785860.1
– PREDICTED: far upstream element-binding protein 1-like [Cicer arietinum] gi|502125416|ref|XP_004498916.1|
Domains
11
Lj1g3v2095550.1
– PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356507955|ref|XP_003522728.1|
Domains
13
Lj1g3v2095550.2
– PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356507955|ref|XP_003522728.1|
Domains
13
Lj1g3v2535040.1
– PREDICTED: KH domain-containing protein At2g38610-like [Glycine max] gi|356532119|ref|XP_003534621.1|
Domains
12
Lj1g3v2546210.1
– PREDICTED: KH domain-containing protein At2g38610-like [Glycine max] gi|356568258|ref|XP_003552330.1|
Domains
13
Lj1g3v2546210.2
– PREDICTED: KH domain-containing protein At2g38610-like [Glycine max] gi|356568258|ref|XP_003552330.1|
Domains
13
Lj1g3v2862760.1
– PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356530005|ref|XP_003533576.1|
Domains
12
Lj1g3v2862760.2
– PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356530005|ref|XP_003533576.1|
Domains
11
Lj1g3v2979180.1
– PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356531744|ref|XP_003534436.1|
Domains
11
Lj1g3v3022300.1
– PREDICTED: protein RIK-like [Glycine max] gi|356568732|ref|XP_003552564.1|
Domains
7
Lj1g3v3022300.2
– PREDICTED: protein RIK-like isoform X2 [Cicer arietinum] gi|502091336|ref|XP_004489518.1|
Domains
6
Lj1g3v3903020.1
– PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356525090|ref|XP_003531160.1|
Domains
7
Lj1g3v3979350.1
– PREDICTED: probable polyribonucleotide nucleotidyltransferase 1, chloroplastic-like [Cicer arietinum] gi|502107284|ref|XP_004493216.1|
Domains
23
Lj1g3v3979350.2
– PREDICTED: probable polyribonucleotide nucleotidyltransferase 1, chloroplastic-like [Cicer arietinum] gi|502107284|ref|XP_004493216.1|
Domains
36
Lj1g3v4407610.1
– PREDICTED: exosome complex component rrp4-like [Cicer arietinum] gi|502115055|ref|XP_004495115.1|
Domains
12
Lj1g3v4479240.1
– PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356572245|ref|XP_003554280.1|
Domains
12
Lj1g3v4479240.2
– PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356572245|ref|XP_003554280.1|
Domains
12
Lj1g3v4995150.1
– PREDICTED: poly(rC)-binding protein 3-like [Vitis vinifera] gi|225463940|ref|XP_002269249.1|
Domains
11
Lj1g3v4997240.1
– PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like [Glycine max] gi|356573119|ref|XP_003554712.1|
Domains
12
Lj1g3v4997250.1
– PREDICTED: poly(rC)-binding protein 3-like [Vitis vinifera] gi|225463940|ref|XP_002269249.1|
Domains
11
Lj2g3v0947360.1
– PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial-like [Cicer arietinum] gi|502090489|ref|XP_004489245.1|
Domains
33
Lj2g3v1068380.1
– PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356572762|ref|XP_003554535.1|
Domains
11
Lj2g3v1105380.1
– PREDICTED: agamous-like MADS-box protein AGL8 homolog [Glycine max] gi|356573575|ref|XP_003554933.1|
Domains
16
Lj2g3v1455300.1
– PREDICTED: KH domain-containing protein At4g18375-like [Cicer arietinum] gi|502162652|ref|XP_004512570.1|
Domains
12
Lj2g3v2124230.1
– Far upstream element-binding protein [Medicago truncatula] gi|357481253|ref|XP_003610912.1|
Domains
11
Lj2g3v2124230.2
– Far upstream element-binding protein [Medicago truncatula] gi|357481253|ref|XP_003610912.1|
Domains
11
Lj2g3v2448180.1
– PREDICTED: KH domain-containing protein At2g38610-like [Glycine max] gi|356569995|ref|XP_003553178.1|
Domains
13
Lj2g3v2937480.1
– PREDICTED: ribosomal RNA assembly protein mis3-like [Glycine max] gi|356501320|ref|XP_003519473.1|
Domains
7
Lj3g3v0271550.1
– Activating signal cointegrator 1 complex subunit [Medicago truncatula] gi|357454839|ref|XP_003597700.1|
Domains
15
Lj3g3v0860600.1
– PREDICTED: atrophin-1-like isoform X1 [Cicer arietinum] gi|502135088|ref|XP_004502216.1|
Domains
11
Lj3g3v0860600.2
– PREDICTED: atrophin-1-like isoform X1 [Cicer arietinum] gi|502135088|ref|XP_004502216.1|
Domains
11
Lj3g3v0860600.3
– PREDICTED: atrophin-1-like isoform X1 [Cicer arietinum] gi|502135088|ref|XP_004502216.1|
Domains
11
Lj3g3v0860600.4
– PREDICTED: atrophin-1-like isoform X1 [Cicer arietinum] gi|502135088|ref|XP_004502216.1|
Domains
10
Lj3g3v1953290.1
– KH domain-containing protein [Medicago truncatula] gi|357456069|ref|XP_003598315.1|
Domains
8
Lj3g3v2057520.1
– PREDICTED: KH domain-containing protein At4g18375-like [Cicer arietinum] gi|502148055|ref|XP_004507020.1|
Domains
10
Lj3g3v3725550.1
– PREDICTED: branchpoint-bridging protein-like isoform X1 [Cicer arietinum] gi|502169018|ref|XP_004514517.1|
Domains
27
Lj4g3v0385920.1
– PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356519471|ref|XP_003528396.1|
Domains
12
Lj4g3v2139160.1
– PREDICTED: KH domain-containing protein At4g18375-like [Cicer arietinum] gi|502150323|ref|XP_004507898.1|
Domains
12
Lj4g3v2468420.1
– PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356525090|ref|XP_003531160.1|
Domains
12
Lj4g3v2468420.2
– PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356525090|ref|XP_003531160.1|
Domains
12
Lj5g3v0348750.1
– PREDICTED: exonuclease 3'-5' domain-containing protein 1-like [Cicer arietinum] gi|502125450|ref|XP_004498930.1|
Domains
18
Lj5g3v0348750.2
– PREDICTED: exonuclease 3'-5' domain-containing protein 1-like [Cicer arietinum] gi|502125450|ref|XP_004498930.1|
Domains
16
Lj5g3v0380090.1
– PREDICTED: far upstream element-binding protein 1-like [Cicer arietinum] gi|502125416|ref|XP_004498916.1|
Domains
11
Lj5g3v0380090.2
– PREDICTED: far upstream element-binding protein 1-like [Cicer arietinum] gi|502125416|ref|XP_004498916.1|
Domains
11
Lj5g3v0380090.3
– PREDICTED: far upstream element-binding protein 1-like [Cicer arietinum] gi|502125416|ref|XP_004498916.1|
Domains
15
Lj5g3v0921030.1
– PREDICTED: zinc finger CCCH domain-containing protein 14-like [Glycine max] gi|356504859|ref|XP_003521212.1|
Domains
17
Lj5g3v1027080.1
– PREDICTED: poly(rC)-binding protein 1-like [Glycine max] gi|356536806|ref|XP_003536925.1|
Domains
13
Lj5g3v1699070.1
– PREDICTED: RNA-binding protein Nova-2-like isoform X1 [Cicer arietinum] gi|502118184|ref|XP_004496141.1|
Domains
10
Lj5g3v1699070.2
– PREDICTED: RNA-binding protein Nova-1-like [Glycine max] gi|356535513|ref|XP_003536289.1|
Domains
12
Lj5g3v1699070.3
– PREDICTED: RNA-binding protein Nova-2-like isoform X1 [Cicer arietinum] gi|502118184|ref|XP_004496141.1|
Domains
12
Lj5g3v1806970.1
– PREDICTED: RNA-binding protein pno1-like [Glycine max] gi|356566309|ref|XP_003551375.1|
Domains
9
Lj5g3v2300300.1
– PREDICTED: zinc finger CCCH domain-containing protein 44-like [Cicer arietinum] gi|502121682|ref|XP_004497409.1|
Domains
18
Lj6g3v0670130.1
– PREDICTED: RNA-binding protein pno1-like [Glycine max] gi|356566309|ref|XP_003551375.1|
Domains
9
Lj6g3v1331880.1
–
Domains
11
Lj6g3v1331890.1
– PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356556240|ref|XP_003546434.1|
Domains
15
Lj6g3v1331890.3
– PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356556240|ref|XP_003546434.1|
Domains
10
Lj6g3v1946390.1
– PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356525090|ref|XP_003531160.1|
Domains
11
Lj6g3v1946390.2
– PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356525090|ref|XP_003531160.1|
Domains
12
Lj6g3v2193420.1
– PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356557593|ref|XP_003547100.1|
Domains
11
Lj6g3v2287350.2
– KH domain-containing protein [Medicago truncatula] gi|357445253|ref|XP_003592904.1|
Domains
9
LotjaGi1g1v0103800.1
– KH domain-containing protein family; TAIR: AT2G38610.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9ZVI3|QKIL3_ARATH KH domain-containing protein At2g38610; TrEMBL-Plants: tr|I3SNF0|I3SNF0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0103800
Domains
12
LotjaGi1g1v0103800.2
– KH domain-containing protein family; TAIR: AT2G38610.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9ZVI3|QKIL3_ARATH KH domain-containing protein At2g38610; TrEMBL-Plants: tr|I3SNF0|I3SNF0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0103800
Domains
13
LotjaGi1g1v0103800.3
– KH domain-containing protein family; TAIR: AT2G38610.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9ZVI3|QKIL3_ARATH KH domain-containing protein At2g38610; TrEMBL-Plants: tr|I3SNF0|I3SNF0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0103800
Domains
13
LotjaGi1g1v0103800.4
– KH domain-containing protein family; TAIR: AT2G38610.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9ZVI3|QKIL3_ARATH KH domain-containing protein At2g38610; TrEMBL-Plants: tr|I3SNF0|I3SNF0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0103800
Domains
12
LotjaGi1g1v0288000.1
– KH domain-containing protein; TAIR: AT5G53060.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q8W4B1|RCF3_ARATH RNA-binding KH domain-containing protein RCF3; TrEMBL-Plants: tr|K7KUU1|K7KUU1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0288000
Domains
14
LotjaGi1g1v0366300.1
– Far upstream element-binding protein; TAIR: AT2G25970.1 KH domain-containing protein; Swiss-Prot: sp|Q8UVD9|FUBP2_CHICK Far upstream element-binding protein 2; TrEMBL-Plants: tr|A0A151TTJ8|A0A151TTJ8_CAJCA Far upstream element-binding protein 1; Found in the gene: LotjaGi1g1v0366300
Domains
12
LotjaGi1g1v0411200.1
– KH domain-containing protein family; TAIR: AT1G51580.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q8W4B1|RCF3_ARATH RNA-binding KH domain-containing protein RCF3; TrEMBL-Plants: tr|V7AXD5|V7AXD5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0411200
Domains
15
LotjaGi1g1v0459900.1
– KH domain-containing family protein; TAIR: AT2G38610.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9ZVI3|QKIL3_ARATH KH domain-containing protein At2g38610; TrEMBL-Plants: tr|I1N3C0|I1N3C0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0459900
Domains
13
LotjaGi1g1v0459900.2
– KH domain-containing protein; TAIR: AT2G38610.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9ZVI3|QKIL3_ARATH KH domain-containing protein At2g38610; TrEMBL-Plants: tr|A0A0B2S8I8|A0A0B2S8I8_GLYSO KH domain-containing protein; Found in the gene: LotjaGi1g1v0459900
Domains
12
LotjaGi1g1v0488800.1
– RNA-binding KH domain protein; TAIR: AT5G15270.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q0VCU0|PCBP4_BOVIN Poly(rC)-binding protein 4; TrEMBL-Plants: tr|A0A0S3RSA7|A0A0S3RSA7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0488800
Domains
13
LotjaGi1g1v0488800.2
– RNA-binding KH domain protein; TAIR: AT5G15270.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9SZH4|PEP_ARATH RNA-binding KH domain-containing protein PEPPER; TrEMBL-Plants: tr|A0A0R0IMX4|A0A0R0IMX4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0488800
Domains
12
LotjaGi1g1v0648200.1
– Polyribonucleotide nucleotidyltransferase; TAIR: AT3G03710.1 polyribonucleotide nucleotidyltransferase; Swiss-Prot: sp|Q69LE7|PNP1_ORYSJ Probable polyribonucleotide nucleotidyltransferase 1, chloroplastic; TrEMBL-Plants: tr|G7L1J6|G7L1J6_MEDTR Polyribonucleotide nucleotidyltransferase; Found in the gene: LotjaGi1g1v0648200
Domains
36
LotjaGi1g1v0712300.1
– RNA-binding KH domain-containing protein; TAIR: AT3G04610.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9SR13|FLK_ARATH Flowering locus K homology domain; TrEMBL-Plants: tr|I1N9N6|I1N9N6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0712300
Domains
14
LotjaGi1g1v0726000.1
– Zinc finger CCCH domain-containing protein; TAIR: AT3G12130.1 KH domain-containing protein / zinc finger (CCCH type) family protein; Swiss-Prot: sp|Q7F8R0|C3H14_ORYSJ Zinc finger CCCH domain-containing protein 14; TrEMBL-Plants: tr|I3T0H6|I3T0H6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0726000
Domains
19
LotjaGi1g1v0731200.1
– Exosome complex component RRP4; TAIR: AT1G03360.1 ribosomal RNA processing 4; Swiss-Prot: sp|Q9ZVT7|RRP4_ARATH Exosome complex component RRP4 homolog; TrEMBL-Plants: tr|B7FL19|B7FL19_MEDTR Ribosomal RNA processing protein; Found in the gene: LotjaGi1g1v0731200
Domains
15
LotjaGi1g1v0782800.1
– RNA-binding KH domain-containing protein; TAIR: AT3G04610.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9SR13|FLK_ARATH Flowering locus K homology domain; TrEMBL-Plants: tr|I1NCB1|I1NCB1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0782800
Domains
14
LotjaGi1g1v0782800.2
– RNA-binding KH domain-containing protein; TAIR: AT3G04610.3 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9SR13|FLK_ARATH Flowering locus K homology domain; TrEMBL-Plants: tr|I1NCB1|I1NCB1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0782800
Domains
14
LotjaGi2g1v0243700.1
– Polyribonucleotide nucleotidyltransferase; TAIR: AT5G14580.1 polyribonucleotide nucleotidyltransferase; Swiss-Prot: sp|Q9S7G6|PNP2_ARATH Polyribonucleotide nucleotidyltransferase 2, mitochondrial; TrEMBL-Plants: tr|V7C0V9|V7C0V9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0243700
Domains
32
LotjaGi2g1v0243700.2
– Polyribonucleotide nucleotidyltransferase; TAIR: AT5G14580.1 polyribonucleotide nucleotidyltransferase; Swiss-Prot: sp|Q9S7G6|PNP2_ARATH Polyribonucleotide nucleotidyltransferase 2, mitochondrial; TrEMBL-Plants: tr|V7C0V9|V7C0V9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0243700
Domains
35
LotjaGi2g1v0260400.1
– KH domain-containing protein; TAIR: AT5G15270.3 RNA-binding KH domain-containing protein; Swiss-Prot: sp|P58223|Y4837_ARATH KH domain-containing protein At4g18375; TrEMBL-Plants: tr|I1N665|I1N665_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0260400
Domains
12
LotjaGi2g1v0260400.2
– KH domain-containing protein; TAIR: AT5G15270.3 RNA-binding KH domain-containing protein; Swiss-Prot: sp|P58223|Y4837_ARATH KH domain-containing protein At4g18375; TrEMBL-Plants: tr|I1N665|I1N665_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0260400
Domains
12
LotjaGi2g1v0260400.3
– KH domain-containing protein; TAIR: AT5G15270.3 RNA-binding KH domain-containing protein; Swiss-Prot: sp|P58223|Y4837_ARATH KH domain-containing protein At4g18375; TrEMBL-Plants: tr|A0A1J7IC78|A0A1J7IC78_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0260400
Domains
12
LotjaGi2g1v0298600.1
– Exosome complex component Rrp4; TAIR: AT2G25355.1 PNAS-3-like protein; Swiss-Prot: sp|Q7KWX9|EXOS3_DICDI Putative exosome complex component rrp40; TrEMBL-Plants: tr|I1JE93|I1JE93_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0298600
Domains
15
LotjaGi2g1v0298600.2
– Exosome complex component Rrp4; TAIR: AT2G25355.1 PNAS-3-like protein; Swiss-Prot: sp|Q7KWX9|EXOS3_DICDI Putative exosome complex component rrp40; TrEMBL-Plants: tr|I1JE93|I1JE93_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0298600
Domains
15
LotjaGi2g1v0328700.1
– RNA-binding KH domain protein; TAIR: AT2G22600.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q8W4B1|RCF3_ARATH RNA-binding KH domain-containing protein RCF3; TrEMBL-Plants: tr|V7CJP6|V7CJP6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0328700
Domains
14
LotjaGi2g1v0446200.1
– Far upstream element-binding protein; TAIR: AT1G33680.1 KH domain-containing protein; Swiss-Prot: sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein 3; TrEMBL-Plants: tr|K7K5E5|K7K5E5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0446200
Domains
12
LotjaGi2g1v0446200.2
– Far upstream element-binding protein; TAIR: AT1G33680.1 KH domain-containing protein; Swiss-Prot: sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein 3; TrEMBL-Plants: tr|K7K5E5|K7K5E5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0446200
Domains
12
LotjaGi2g1v0446200.3
– Far upstream element-binding protein; TAIR: AT1G33680.1 KH domain-containing protein; Swiss-Prot: sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein 3; TrEMBL-Plants: tr|K7K5E4|K7K5E4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0446200
Domains
12
LotjaGi2g1v0446200.4
– RNA-binding KH domain protein; TAIR: AT1G33680.1 KH domain-containing protein; Swiss-Prot: sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein 3; TrEMBL-Plants: tr|K7K5E4|K7K5E4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0446200
Domains
12
LotjaGi2g1v0456300_LC.1
– Polyribonucleotide nucleotidyltransferase; TAIR: AT2G25970.1 KH domain-containing protein; Swiss-Prot: sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein 3; TrEMBL-Plants: tr|A0A0B2RX31|A0A0B2RX31_GLYSO Far upstream element-binding protein 2; Found in the gene: LotjaGi2g1v0456300_LC
Domains
11
LotjaGi3g1v0052300.1
– KH domain-containing family protein; TAIR: AT2G38610.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9ZVI3|QKIL3_ARATH KH domain-containing protein At2g38610; TrEMBL-Plants: tr|I1L6X1|I1L6X1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0052300
Domains
12
LotjaGi3g1v0052300.2
– KH domain-containing protein; TAIR: AT2G38610.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9ZVI3|QKIL3_ARATH KH domain-containing protein At2g38610; TrEMBL-Plants: tr|I1L6X1|I1L6X1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0052300
Domains
11
LotjaGi3g1v0052300.3
– KH domain-containing protein; TAIR: AT2G38610.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9ZVI3|QKIL3_ARATH KH domain-containing protein At2g38610; TrEMBL-Plants: tr|I1L6X1|I1L6X1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0052300
Domains
11
LotjaGi3g1v0052300.4
– KH domain-containing protein; TAIR: AT2G38610.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9ZVI3|QKIL3_ARATH KH domain-containing protein At2g38610; TrEMBL-Plants: tr|I1L6X1|I1L6X1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0052300
Domains
11
LotjaGi3g1v0052300.5
– KH domain-containing protein; TAIR: AT3G08620.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q8GYR4|QKIL4_ARATH KH domain-containing protein At3g08620; TrEMBL-Plants: tr|I1L6X0|I1L6X0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0052300
Domains
11
LotjaGi3g1v0345500.1
– KH domain-containing protein family; TAIR: AT5G64390.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|F4KDN0|HEN4_ARATH KH domain-containing protein HEN4; TrEMBL-Plants: tr|V7B896|V7B896_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0345500
Domains
14
LotjaGi3g1v0552600.1
– RNA-binding protein 3; TAIR: AT5G51300.1 splicing factor-like protein; Swiss-Prot: sp|P0CO45|BBP_CRYNB Branchpoint-bridging protein; TrEMBL-Plants: tr|I1L5P7|I1L5P7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0552600
Domains
30
LotjaGi4g1v0040000.1
– RNA-binding KH domain protein; TAIR: AT1G51580.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q8W4B1|RCF3_ARATH RNA-binding KH domain-containing protein RCF3; TrEMBL-Plants: tr|I1KL57|I1KL57_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0040000
Domains
14
LotjaGi4g1v0305900.1
– Poly(RC)-binding-like protein; TAIR: AT4G26000.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9SZH4|PEP_ARATH RNA-binding KH domain-containing protein PEPPER; TrEMBL-Plants: tr|A0A151T5F8|A0A151T5F8_CAJCA Poly(RC)-binding protein 3; Found in the gene: LotjaGi4g1v0305900
Domains
13
LotjaGi4g1v0360700.1
– KH domain-containing protein; TAIR: AT5G46190.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|P58223|Y4837_ARATH KH domain-containing protein At4g18375; TrEMBL-Plants: tr|I1KRV4|I1KRV4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0360700
Domains
13
LotjaGi4g1v0360700.2
– KH domain-containing protein; TAIR: AT5G46190.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|P58223|Y4837_ARATH KH domain-containing protein At4g18375; TrEMBL-Plants: tr|I1KRV4|I1KRV4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0360700
Domains
13
LotjaGi4g1v0360700.3
– KH domain-containing protein; TAIR: AT5G46190.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|P58223|Y4837_ARATH KH domain-containing protein At4g18375; TrEMBL-Plants: tr|I1KRV4|I1KRV4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0360700
Domains
13
LotjaGi5g1v0039700.1
– Exonuclease 3'-5' domain-containing protein 1; TAIR: AT2G25910.1 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein; Swiss-Prot: sp|Q8CDF7|EXD1_MOUSE piRNA biogenesis protein EXD1; TrEMBL-Plants: tr|I1MXE7|I1MXE7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0039700
Domains
19
LotjaGi5g1v0040300.1
– Far upstream element-binding protein; TAIR: AT2G25970.1 KH domain-containing protein; Swiss-Prot: sp|Q96AE4|FUBP1_HUMAN Far upstream element-binding protein 1; TrEMBL-Plants: tr|I1M903|I1M903_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0040300
Domains
12
LotjaGi5g1v0177100.1
– RNA-binding KH domain-containing protein; TAIR: AT3G04610.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9SR13|FLK_ARATH Flowering locus K homology domain; TrEMBL-Plants: tr|A0A0L9TX81|A0A0L9TX81_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0177100
Domains
15
LotjaGi5g1v0253700.1
– RNA-binding KH domain protein; TAIR: AT5G04430.2 binding to TOMV RNA 1L (long form); Swiss-Prot: sp|Q9LZ82|BTR1_ARATH Protein BTR1; TrEMBL-Plants: tr|A0A151T0U1|A0A151T0U1_CAJCA RNA-binding protein Nova-1; Found in the gene: LotjaGi5g1v0253700
Domains
13
LotjaGi5g1v0253700.2
– RNA-binding KH domain protein; TAIR: AT5G04430.2 binding to TOMV RNA 1L (long form); Swiss-Prot: sp|Q9LZ82|BTR1_ARATH Protein BTR1; TrEMBL-Plants: tr|I1LCN2|I1LCN2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0253700
Domains
13
LotjaGi5g1v0271600.2
– RNA-binding protein pno1; TAIR: AT3G13230.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9VR89|PNO1_DROME RNA-binding protein pno1; TrEMBL-Plants: tr|I3SQ56|I3SQ56_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0271600
Domains
11
LotjaGi5g1v0364400.1
– Zinc finger CCCH domain-containing protein; TAIR: AT5G06770.1 KH domain-containing protein / zinc finger (CCCH type) family protein; Swiss-Prot: sp|Q7F8R0|C3H14_ORYSJ Zinc finger CCCH domain-containing protein 14; TrEMBL-Plants: tr|C6TA41|C6TA41_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0364400
Domains
20
LotjaGi6g1v0037900.1
– RNA-binding KH domain protein; TAIR: AT3G32940.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q54BM5|BBP_DICDI Branchpoint-bridging protein; TrEMBL-Plants: tr|G7JA56|G7JA56_MEDTR RNA-binding KH domain protein; Found in the gene: LotjaGi6g1v0037900
Domains
11
LotjaGi6g1v0037900.2
– RNA-binding KH domain protein; TAIR: AT3G32940.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q54BM5|BBP_DICDI Branchpoint-bridging protein; TrEMBL-Plants: tr|G7JA56|G7JA56_MEDTR RNA-binding KH domain protein; Found in the gene: LotjaGi6g1v0037900
Domains
12
LotjaGi6g1v0037900.3
– RNA-binding KH domain protein; TAIR: AT3G32940.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q54BM5|BBP_DICDI Branchpoint-bridging protein; TrEMBL-Plants: tr|A0A072VAL9|A0A072VAL9_MEDTR RNA-binding KH domain protein; Found in the gene: LotjaGi6g1v0037900
Domains
12
LotjaGi6g1v0037900.4
– RNA-binding KH domain protein; TAIR: AT3G32940.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q54BM5|BBP_DICDI Branchpoint-bridging protein; TrEMBL-Plants: tr|A0A072VAL9|A0A072VAL9_MEDTR RNA-binding KH domain protein; Found in the gene: LotjaGi6g1v0037900
Domains
12
LotjaGi6g1v0045700.1
– KH domain-containing protein family; TAIR: AT2G38610.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9ZVI3|QKIL3_ARATH KH domain-containing protein At2g38610; TrEMBL-Plants: tr|I3T4M5|I3T4M5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0045700
Domains
12
LotjaGi6g1v0045700.2
– KH domain-containing protein family; TAIR: AT2G38610.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9ZVI3|QKIL3_ARATH KH domain-containing protein At2g38610; TrEMBL-Plants: tr|I3T4M5|I3T4M5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0045700
Domains
12
LotjaGi6g1v0138200.2
– RNA-binding protein pno1; TAIR: AT3G13230.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9VR89|PNO1_DROME RNA-binding protein pno1; TrEMBL-Plants: tr|I3SQ56|I3SQ56_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0138200
Domains
11
LotjaGi6g1v0235300.1
– Poly(RC)-binding-like protein; TAIR: AT4G26000.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9SZH4|PEP_ARATH RNA-binding KH domain-containing protein PEPPER; TrEMBL-Plants: tr|K7MBU6|K7MBU6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0235300
Domains
13
LotjaGi6g1v0311200.1
– KH domain-containing protein; TAIR: AT5G46190.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|P58223|Y4837_ARATH KH domain-containing protein At4g18375; TrEMBL-Plants: tr|A0A1J7I5W2|A0A1J7I5W2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0311200
Domains
13
LotjaGi6g1v0349100.1
– RNA-binding KH domain protein; TAIR: AT1G51580.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|F4KDN0|HEN4_ARATH KH domain-containing protein HEN4; TrEMBL-Plants: tr|K7M1V9|K7M1V9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0349100
Domains
14

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 0.81