Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR004088
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 124 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 5.661s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0166159.1
n.a. PREDICTED: ribosomal RNA assembly protein mis3-like [Glycine max] gi|356501320|ref|XP_003519473.1| chr0 79016938 79020913 +
3 domain predictions
1 GO term
Lj0g3v0213029.1
n.a. KH domain-containing protein [Medicago truncatula] gi|357491547|ref|XP_003616061.1| chr0 107501118 107504769 +
4 domain predictions
1 GO term
Lj0g3v0243119.1
n.a. PREDICTED: LOW QUALITY PROTEIN: poly(rC)-binding protein 3-like [Cucumis sativus] gi|449463577|ref|XP_004149510.1| chr0 126080488 126082048 -
5 domain predictions
1 GO term
Lj0g3v0317579.1
n.a. PREDICTED: far upstream element-binding protein 2-like [Cicer arietinum] gi|502132673|ref|XP_004501474.1| chr0 165918002 165918565 -
5 domain predictions
1 GO term
Lj1g3v0986640.1
n.a. PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356516077|ref|XP_003526723.1| chr1 12602723 12609074 -
5 domain predictions
1 GO term
Lj1g3v1785860.1
n.a. PREDICTED: far upstream element-binding protein 1-like [Cicer arietinum] gi|502125416|ref|XP_004498916.1| chr1 20869078 20874965 -
5 domain predictions
1 GO term
Lj1g3v2095550.1
n.a. PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356507955|ref|XP_003522728.1| chr1 24813269 24818222 -
5 domain predictions
1 GO term
Lj1g3v2095550.2
n.a. PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356507955|ref|XP_003522728.1| chr1 24814544 24818222 -
5 domain predictions
1 GO term
Lj1g3v2535040.1
n.a. PREDICTED: KH domain-containing protein At2g38610-like [Glycine max] gi|356532119|ref|XP_003534621.1| chr1 29127788 29133588 -
4 domain predictions
1 GO term
Lj1g3v2546210.1
n.a. PREDICTED: KH domain-containing protein At2g38610-like [Glycine max] gi|356568258|ref|XP_003552330.1| chr1 29297717 29304255 -
5 domain predictions
1 GO term
Lj1g3v2546210.2
n.a. PREDICTED: KH domain-containing protein At2g38610-like [Glycine max] gi|356568258|ref|XP_003552330.1| chr1 29297717 29304255 -
5 domain predictions
1 GO term
Lj1g3v2862760.1
n.a. PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356530005|ref|XP_003533576.1| chr1 32464347 32473141 +
5 domain predictions
1 GO term
Lj1g3v2862760.2
n.a. PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356530005|ref|XP_003533576.1| chr1 32464347 32473141 +
5 domain predictions
1 GO term
Lj1g3v2979180.1
n.a. PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356531744|ref|XP_003534436.1| chr1 33829686 33833274 +
5 domain predictions
1 GO term
Lj1g3v3022300.1
n.a. PREDICTED: protein RIK-like [Glycine max] gi|356568732|ref|XP_003552564.1| chr1 34350931 34364157 +
3 domain predictions
1 GO term
Lj1g3v3022300.2
n.a. PREDICTED: protein RIK-like isoform X2 [Cicer arietinum] gi|502091336|ref|XP_004489518.1| chr1 34350931 34364157 +
2 domain predictions
1 GO term
Lj1g3v3903020.1
n.a. PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356525090|ref|XP_003531160.1| chr1 45292664 45297580 -
2 domain predictions
1 GO term
Lj1g3v3979350.1
n.a. PREDICTED: probable polyribonucleotide nucleotidyltransferase 1, chloroplastic-like [Cicer arietinum] gi|502107284|ref|XP_004493216.1| chr1 47291452 47298821 -
5 domain predictions
1 GO term
Lj1g3v3979350.2
n.a. PREDICTED: probable polyribonucleotide nucleotidyltransferase 1, chloroplastic-like [Cicer arietinum] gi|502107284|ref|XP_004493216.1| chr1 47291452 47317513 -
5 domain predictions
1 GO term
Lj1g3v4407610.1
n.a. PREDICTED: exosome complex component rrp4-like [Cicer arietinum] gi|502115055|ref|XP_004495115.1| chr1 51410112 51413894 -
3 domain predictions
1 GO term
Lj1g3v4479240.1
n.a. PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356572245|ref|XP_003554280.1| chr1 52420242 52426084 +
5 domain predictions
1 GO term
Lj1g3v4479240.2
n.a. PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356572245|ref|XP_003554280.1| chr1 52420242 52426084 +
5 domain predictions
1 GO term
Lj1g3v4995150.1
n.a. PREDICTED: poly(rC)-binding protein 3-like [Vitis vinifera] gi|225463940|ref|XP_002269249.1| chr1 60656664 60659153 -
5 domain predictions
1 GO term
Lj1g3v4997240.1
n.a. PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like [Glycine max] gi|356573119|ref|XP_003554712.1| chr1 60703151 60709668 +
5 domain predictions
1 GO term
Lj1g3v4997250.1
n.a. PREDICTED: poly(rC)-binding protein 3-like [Vitis vinifera] gi|225463940|ref|XP_002269249.1| chr1 60703152 60709961 +
5 domain predictions
1 GO term
Lj2g3v0947360.1
n.a. PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial-like [Cicer arietinum] gi|502090489|ref|XP_004489245.1| chr2 15051767 15062803 -
5 domain predictions
1 GO term
Lj2g3v1068380.1
n.a. PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356572762|ref|XP_003554535.1| chr2 16990409 16997239 +
5 domain predictions
1 GO term
Lj2g3v1105380.1
n.a. PREDICTED: agamous-like MADS-box protein AGL8 homolog [Glycine max] gi|356573575|ref|XP_003554933.1| chr2 17881201 17886147 +
2 domain predictions
1 GO term
Lj2g3v1455300.1
n.a. PREDICTED: KH domain-containing protein At4g18375-like [Cicer arietinum] gi|502162652|ref|XP_004512570.1| chr2 23001170 23006538 +
5 domain predictions
1 GO term
Lj2g3v2124230.1
n.a. Far upstream element-binding protein [Medicago truncatula] gi|357481253|ref|XP_003610912.1| chr2 31881782 31889877 +
5 domain predictions
1 GO term
Lj2g3v2124230.2
n.a. Far upstream element-binding protein [Medicago truncatula] gi|357481253|ref|XP_003610912.1| chr2 31881782 31889877 +
5 domain predictions
1 GO term
Lj2g3v2448180.1
n.a. PREDICTED: KH domain-containing protein At2g38610-like [Glycine max] gi|356569995|ref|XP_003553178.1| chr2 34573883 34577148 +
4 domain predictions
1 GO term
Lj2g3v2937480.1
n.a. PREDICTED: ribosomal RNA assembly protein mis3-like [Glycine max] gi|356501320|ref|XP_003519473.1| chr2 38280873 38284785 +
3 domain predictions
1 GO term
Lj3g3v0271550.1
n.a. Activating signal cointegrator 1 complex subunit [Medicago truncatula] gi|357454839|ref|XP_003597700.1| chr3 1607970 1613370 -
5 domain predictions
1 GO term
Lj3g3v0860600.1
n.a. PREDICTED: atrophin-1-like isoform X1 [Cicer arietinum] gi|502135088|ref|XP_004502216.1| chr3 10677355 10684218 +
5 domain predictions
1 GO term
Lj3g3v0860600.2
n.a. PREDICTED: atrophin-1-like isoform X1 [Cicer arietinum] gi|502135088|ref|XP_004502216.1| chr3 10677493 10684218 +
5 domain predictions
1 GO term
Lj3g3v0860600.3
n.a. PREDICTED: atrophin-1-like isoform X1 [Cicer arietinum] gi|502135088|ref|XP_004502216.1| chr3 10677493 10684432 +
5 domain predictions
1 GO term
Lj3g3v0860600.4
n.a. PREDICTED: atrophin-1-like isoform X1 [Cicer arietinum] gi|502135088|ref|XP_004502216.1| chr3 10678495 10684218 +
5 domain predictions
1 GO term
Lj3g3v1953290.1
n.a. KH domain-containing protein [Medicago truncatula] gi|357456069|ref|XP_003598315.1| chr3 25061657 25069245 -
3 domain predictions
1 GO term
Lj3g3v2057520.1
n.a. PREDICTED: KH domain-containing protein At4g18375-like [Cicer arietinum] gi|502148055|ref|XP_004507020.1| chr3 26465468 26469277 -
5 domain predictions
1 GO term
Lj3g3v3725550.1
n.a. PREDICTED: branchpoint-bridging protein-like isoform X1 [Cicer arietinum] gi|502169018|ref|XP_004514517.1| chr3 45131568 45134991 -
5 domain predictions
1 GO term
Lj4g3v0385920.1
n.a. PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356519471|ref|XP_003528396.1| chr4 5012463 5016712 +
5 domain predictions
1 GO term
Lj4g3v2139160.1
n.a. PREDICTED: KH domain-containing protein At4g18375-like [Cicer arietinum] gi|502150323|ref|XP_004507898.1| chr4 29385503 29389692 -
5 domain predictions
1 GO term
Lj4g3v2468420.1
n.a. PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356525090|ref|XP_003531160.1| chr4 33751147 33760044 +
5 domain predictions
1 GO term
Lj4g3v2468420.2
n.a. PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356525090|ref|XP_003531160.1| chr4 33751147 33760044 +
5 domain predictions
1 GO term
Lj5g3v0348750.1
n.a. PREDICTED: exonuclease 3'-5' domain-containing protein 1-like [Cicer arietinum] gi|502125450|ref|XP_004498930.1| chr5 3392382 3399872 -
5 domain predictions
1 GO term
Lj5g3v0348750.2
n.a. PREDICTED: exonuclease 3'-5' domain-containing protein 1-like [Cicer arietinum] gi|502125450|ref|XP_004498930.1| chr5 3393342 3399872 -
5 domain predictions
1 GO term
Lj5g3v0380090.1
n.a. PREDICTED: far upstream element-binding protein 1-like [Cicer arietinum] gi|502125416|ref|XP_004498916.1| chr5 3552090 3555971 -
5 domain predictions
1 GO term
Lj5g3v0380090.2
n.a. PREDICTED: far upstream element-binding protein 1-like [Cicer arietinum] gi|502125416|ref|XP_004498916.1| chr5 3552090 3556558 -
5 domain predictions
1 GO term
Lj5g3v0380090.3
n.a. PREDICTED: far upstream element-binding protein 1-like [Cicer arietinum] gi|502125416|ref|XP_004498916.1| chr5 3554674 3556558 -
5 domain predictions
1 GO term