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Lj2g3v2124450.1

Overview

Field Value
Gene ID Lj2g3v2124450
Transcript ID Lj2g3v2124450.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g71420-like [Glycine max] gi|356495756|ref|XP_003516739.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24015:SF916
4 380 377 2.70E-235 –
PANTHER
PTHR24015
4 380 377 2.70E-235 –
Pfam
PF13041
105 151 47 2.30E-07
IPR002885
ProSiteProfiles
PS51375
105 138 34 6.577
IPR002885
ProSiteProfiles
PS51375
139 173 35 5.93
IPR002885
Gene3D
G3DSA:1.25.40.10
158 359 202 5.50E-07
IPR011990
ProSiteProfiles
PS51375
174 208 35 9.328
IPR002885
TIGRFAM
TIGR00756
179 206 28 6.80E-04
IPR002885
Pfam
PF01535
179 203 25 0.0033
IPR002885
Pfam
PF01535
207 232 26 8.20E-06
IPR002885
TIGRFAM
TIGR00756
207 232 26 5.50E-04
IPR002885
ProSiteProfiles
PS51375
209 235 27 5.842
IPR002885
ProSiteProfiles
PS51375
237 272 36 9.482
IPR002885
Pfam
PF01535
240 266 27 4.80E-04
IPR002885
TIGRFAM
TIGR00756
240 272 33 2.20E-05
IPR002885
ProSiteProfiles
PS51375
273 303 31 7.136
IPR002885
Pfam
PF01535
277 301 25 0.039
IPR002885
ProSiteProfiles
PS51375
305 335 31 5.908
IPR002885
ProSiteProfiles
PS51375
339 373 35 6.522
IPR002885
Pfam
PF14432
375 503 129 2.60E-33
IPR032867

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj2g3v2124450.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v2124450.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.