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Lj2g3v2124840.1

Overview

Field Value
Gene ID Lj2g3v2124840
Transcript ID Lj2g3v2124840.1
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description Ribonuclease P protein subunit p29 [Medicago truncatula] gi|357481161|ref|XP_003610866.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13348
1 72 72 1.40E-73 –
Coils
Coil
3 30 28 – –
MobiDBLite
mobidb-lite
30 56 27 – –
PANTHER
PTHR13348
103 294 192 1.40E-73 –
SMART
SM00538
215 299 85 6.60E-06
IPR002730
Gene3D
G3DSA:2.30.30.210
215 295 81 2.30E-18
IPR002730
Pfam
PF01868
221 295 75 4.20E-18
IPR002730
SUPERFAMILY
SSF101744
224 295 72 2.79E-17
IPR023534

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0004540
Molecular function Ribonuclease activity Catalysis of the hydrolysis of phosphodiester bonds in chains of RNA.
Subterm of
GO:0006396
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Subterm of
Part of
GO:0030677
Cellular component Ribonuclease P complex A ribonucleoprotein complex that catalyzes cleavage of the leader sequence of precursor tRNAs (pre-tRNAs), generating the mature 5' end of tRNAs.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj2g3v2124840.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v2124840.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.