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Lj2g3v2233030.1

Overview

Field Value
Gene ID Lj2g3v2233030
Transcript ID Lj2g3v2233030.1
Lotus japonicus genome version MG20 v3.0
Description Cc-nbs-lrr resistance protein [Medicago truncatula] gi|357490913|ref|XP_003615744.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23155:SF505
3 753 751 6.40E-272 –
CDD
cd14798
3 119 117 9.55E-14 –
PANTHER
PTHR23155
3 753 751 6.40E-272 –
Coils
Coil
31 51 21 – –
SUPERFAMILY
SSF52540
138 417 280 4.86E-66
IPR027417
Gene3D
G3DSA:3.40.50.300
155 304 150 2.40E-13
IPR027417
Pfam
PF00931
156 444 289 5.40E-64
IPR002182
PRINTS
PR00364
178 193 16 9.30E-18 –
PRINTS
PR00364
251 265 15 9.30E-18 –
PRINTS
PR00364
355 369 15 9.30E-18 –
SUPERFAMILY
SSF52058
481 672 192 2.55E-30
IPR032675
Gene3D
G3DSA:3.80.10.10
534 690 157 1.30E-09
IPR032675
SUPERFAMILY
SSF52058
701 859 159 2.55E-30
IPR032675
Gene3D
G3DSA:3.80.10.10
733 991 259 8.40E-21
IPR032675
PANTHER
PTHR23155
777 802 26 6.40E-272 –
PANTHER
PTHR23155:SF505
777 802 26 6.40E-272 –
SUPERFAMILY
SSF52058
811 1005 195 1.36E-17
IPR032675
PRINTS
PR00364
923 939 17 9.30E-18 –
PANTHER
PTHR23155
950 973 24 6.40E-272 –
PANTHER
PTHR23155:SF505
950 973 24 6.40E-272 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0043531
Molecular function ADP binding Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate.
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj2g3v2233030.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v2233030.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.