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| Field | Value |
|---|---|
| Gene ID | Lj2g3v2410320 |
| Transcript ID | Lj2g3v2410320.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pseudouridylate synthase [Medicago truncatula] gi|357491367|ref|XP_003615971.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 44 | 230 | 187 | 1.90E-181 | – | |
| PANTHER | 44 | 230 | 187 | 1.90E-181 | ||
| SUPERFAMILY | 51 | 235 | 185 | 2.45E-31 | ||
| Gene3D | 51 | 175 | 125 | 1.00E-20 | ||
| CDD | 56 | 413 | 358 | 3.01E-73 | – | |
| Gene3D | 178 | 232 | 55 | 1.70E-24 | ||
| MobiDBLite | 230 | 249 | 20 | – | – | |
| Pfam | 265 | 395 | 131 | 1.80E-06 | ||
| PANTHER | 328 | 494 | 167 | 1.90E-181 | ||
| PANTHER | 328 | 494 | 167 | 1.90E-181 | – | |
| SUPERFAMILY | 328 | 413 | 86 | 4.46E-10 | ||
| Gene3D | 331 | 413 | 83 | 1.70E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Pseudouridine synthesis | The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Biological process | RNA modification | The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. | ||
| Molecular function | Pseudouridine synthase activity | Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5. |
Expression pattern of Lj2g3v2410320.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v2410320.2, powered by CORGI.
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