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cd02568

Source: CDD

Description

PseudoU_synth_PUS1_PUS2

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0009982
Molecular function Pseudouridine synthase activity Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
Subterm of
GO:0031119
Biological process TRNA pseudouridine synthesis The intramolecular conversion of uridine to pseudouridine in a tRNA molecule.
Subterm of

Associated Lotus transcripts 7

Transcript Name Description Predicted domains Domain count
Lj0g3v0343009.1
– TRNA pseudouridine synthase [Medicago truncatula] gi|357480149|ref|XP_003610360.1|
Domains
13
Lj2g3v2379070.1
– Pseudouridylate synthase [Medicago truncatula] gi|357491363|ref|XP_003615969.1|
Domains
19
Lj2g3v2410320.2
– Pseudouridylate synthase [Medicago truncatula] gi|357491367|ref|XP_003615971.1|
Domains
13
LotjaGi1g1v0109500.1
– TRNA pseudouridine synthase A, related protein; TAIR: AT2G30320.1 Pseudouridine synthase family protein; Swiss-Prot: sp|O22928|PUSH_ARATH Putative tRNA pseudouridine synthase; TrEMBL-Plants: tr|K7KAB0|K7KAB0_SOYBN tRNA pseudouridine synthase; Found in the gene: LotjaGi1g1v0109500
Domains
13
LotjaGi1g1v0110600.1
– TRNA pseudouridine synthase A; TAIR: AT2G30320.1 Pseudouridine synthase family protein; Swiss-Prot: sp|O22928|PUSH_ARATH Putative tRNA pseudouridine synthase; TrEMBL-Plants: tr|K7KAA8|K7KAA8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0110600
Domains
19
LotjaGi4g1v0286200.1
– TRNA pseudouridine synthase A, related protein; TAIR: AT1G20370.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q6CC39|PUS1_YARLI tRNA pseudouridine synthase 1; TrEMBL-Plants: tr|G7JGU0|G7JGU0_MEDTR tRNA pseudouridine synthase A, related protein; Found in the gene: LotjaGi4g1v0286200
Domains
13
LotjaGi4g1v0286200.2
– TRNA pseudouridine synthase A, related protein; TAIR: AT1G20370.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q6CC39|PUS1_YARLI tRNA pseudouridine synthase 1; TrEMBL-Plants: tr|G7JGU0|G7JGU0_MEDTR tRNA pseudouridine synthase A, related protein; Found in the gene: LotjaGi4g1v0286200
Domains
13

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 14.29