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Lj2g3v2661500.1

Overview

Field Value
Gene ID Lj2g3v2661500
Transcript ID Lj2g3v2661500.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ras-related protein Rab2BV-like [Glycine max] gi|356551598|ref|XP_003544161.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24073
1 216 216 1.20E-172 –
SMART
SM00177
1 185 185 0.0096 –
PANTHER
PTHR24073:SF484
1 216 216 1.20E-172 –
Gene3D
G3DSA:3.40.50.300
6 199 194 1.10E-73
IPR027417
SUPERFAMILY
SSF52540
8 178 171 1.57E-59
IPR027417
ProSiteProfiles
PS51419
8 214 207 36.409 –
CDD
cd01868
10 174 165 2.42E-126 –
SMART
SM00173
10 176 167 4.50E-28 –
TIGRFAM
TIGR00231
11 169 159 6.30E-40
IPR005225
PRINTS
PR00449
13 34 22 2.20E-40 –
SMART
SM00175
13 176 164 4.20E-113 –
Pfam
PF00071
14 173 160 2.50E-61
IPR001806
SMART
SM00174
15 172 158 6.50E-11 –
SMART
SM00176
18 213 196 9.90E-08 –
PRINTS
PR00449
36 52 17 2.20E-40 –
PRINTS
PR00449
54 76 23 2.20E-40 –
PRINTS
PR00449
116 129 14 2.20E-40 –
PRINTS
PR00449
151 173 23 2.20E-40 –
MobiDBLite
mobidb-lite
196 216 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj2g3v2661500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v2661500.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.