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Lj2g3v2688000.1

Overview

Field Value
Gene ID Lj2g3v2688000
Transcript ID Lj2g3v2688000.1
Lotus japonicus genome version MG20 v3.0
Description RING/FYVE/PHD zinc finger superfamily protein [Theobroma cacao] gi|508726041|gb|EOY17938.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 45 45 – –
Phobius
CYTOPLASMIC_DOMAIN
1 195 195 – –
PANTHER
PTHR23012
15 220 206 7.50E-101
IPR033275
PANTHER
PTHR23012:SF87
15 220 206 7.50E-101 –
ProSiteProfiles
PS51292
87 155 69 17.748
IPR011016
SUPERFAMILY
SSF57850
92 151 60 2.12E-10 –
Gene3D
G3DSA:3.30.40.10
92 150 59 5.90E-16
IPR013083
SMART
SM00744
94 149 56 2.80E-18
IPR011016
Pfam
PF12906
95 148 54 3.30E-09
IPR011016
Phobius
TRANSMEMBRANE
196 214 19 – –
TMHMM
TMhelix
196 218 23 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
215 220 6 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions 56

Expression data

Expression pattern

Expression pattern of Lj2g3v2688000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v2688000.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.