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| Field | Value |
|---|---|
| Gene ID | Lj2g3v2876160 |
| Transcript ID | Lj2g3v2876160.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: E3 ubiquitin-protein ligase BRE1-like 2-like isoform 1 [Glycine max] gi|356554544|ref|XP_003545605.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | – | – | |
| PANTHER | 16 | 871 | 856 | 0 | – | |
| PANTHER | 16 | 871 | 856 | 0 | – | |
| Coils | 38 | 72 | 35 | – | – | |
| Coils | 205 | 232 | 28 | – | – | |
| Coils | 240 | 267 | 28 | – | – | |
| Coils | 319 | 339 | 21 | – | – | |
| Coils | 397 | 438 | 42 | – | – | |
| Coils | 504 | 538 | 35 | – | – | |
| Coils | 574 | 615 | 42 | – | – | |
| Coils | 679 | 706 | 28 | – | – | |
| Coils | 749 | 816 | 68 | – | – | |
| Gene3D | 806 | 867 | 62 | 4.10E-13 | ||
| SUPERFAMILY | 818 | 862 | 45 | 6.48E-12 | – | |
| Pfam | 818 | 859 | 42 | 1.40E-08 | – | |
| CDD | 818 | 857 | 40 | 2.87E-10 | – | |
| ProSiteProfiles | 819 | 857 | 39 | 11.102 | ||
| SMART | 819 | 857 | 39 | 2.90E-05 | ||
| ProSitePatterns | 834 | 843 | 10 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of Lj2g3v2876160.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v2876160.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.