Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj2g3v2878370.1

Overview

Field Value
Gene ID Lj2g3v2878370
Transcript ID Lj2g3v2878370.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: EH domain-containing protein 1-like [Glycine max] gi|356522037|ref|XP_003529656.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11216:SF76
66 607 542 0 –
PANTHER
PTHR11216
66 607 542 0 –
SUPERFAMILY
SSF47473
69 154 86 7.13E-20
IPR011992
Gene3D
G3DSA:1.10.238.10
71 154 84 4.20E-22
IPR011992
SMART
SM00027
73 165 93 4.70E-13
IPR000261
ProSiteProfiles
PS50031
80 151 72 12.036
IPR000261
Pfam
PF12763
80 145 66 1.60E-06
IPR000261
CDD
cd00052
84 150 67 1.09E-20 –
ProSiteProfiles
PS50222
113 148 36 9.911
IPR002048
MobiDBLite
mobidb-lite
184 212 29 – –
Pfam
PF16880
228 260 33 1.50E-15
IPR031692
SUPERFAMILY
SSF52540
255 532 278 2.45E-31
IPR027417
ProSiteProfiles
PS51718
259 494 236 30.115
IPR030381
Gene3D
G3DSA:3.40.50.300
263 311 49 3.00E-15
IPR027417
CDD
cd09913
264 508 245 2.56E-141 –
Pfam
PF00350
265 424 160 1.30E-09
IPR022812
Gene3D
G3DSA:3.40.50.300
353 456 104 3.00E-15
IPR027417
Coils
Coil
533 553 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005509
Molecular function Calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj2g3v2878370.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v2878370.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.