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Lj2g3v2878400.1

Overview

Field Value
Gene ID Lj2g3v2878400
Transcript ID Lj2g3v2878400.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable tyrosine-protein phosphatase At1g05000-like [Glycine max] gi|356522035|ref|XP_003529655.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31126:SF15
21 187 167 2.50E-115 –
PANTHER
PTHR31126
21 187 167 2.50E-115 –
PRINTS
PR01911
28 45 18 1.10E-29
IPR020428
SUPERFAMILY
SSF52799
28 175 148 6.67E-38
IPR029021
Pfam
PF03162
29 182 154 1.10E-58
IPR004861
Gene3D
G3DSA:3.90.190.10
29 175 147 7.80E-36
IPR029021
PRINTS
PR01911
65 78 14 1.10E-29
IPR020428
PRINTS
PR01911
84 98 15 1.10E-29
IPR020428
PRINTS
PR01911
101 115 15 1.10E-29
IPR020428
ProSitePatterns
PS00383
123 133 11 –
IPR016130

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004725
Molecular function Protein tyrosine phosphatase activity Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate.
Subterm of
GO:0016311
Biological process Dephosphorylation The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
Subterm of
GO:0016791
Molecular function Phosphatase activity Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate.
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj2g3v2878400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v2878400.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.