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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR029021
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 118 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 5.529s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0165519.1
n.a. PREDICTED: paladin-like [Cicer arietinum] gi|502117477|ref|XP_004495834.1| chr0 78604292 78617107 +
3 domain predictions
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Lj0g3v0165519.2
n.a. PREDICTED: paladin-like [Glycine max] gi|356575263|ref|XP_003555761.1| chr0 78604292 78617107 +
3 domain predictions
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Lj0g3v0255209.1
n.a. Tyrosine specific protein phosphatase family protein [Medicago truncatula] gi|357493185|ref|XP_003616881.1| chr0 132535547 132541520 -
3 domain predictions
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Lj0g3v0255209.2
n.a. Tyrosine specific protein phosphatase family protein [Medicago truncatula] gi|357493185|ref|XP_003616881.1| chr0 132537397 132541520 -
3 domain predictions
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Lj0g3v0256839.1
n.a. PREDICTED: mRNA-capping enzyme-like [Glycine max] gi|356568041|ref|XP_003552222.1| chr0 133328014 133337632 -
3 domain predictions
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Lj0g3v0256839.2
n.a. PREDICTED: mRNA-capping enzyme-like [Glycine max] gi|356568041|ref|XP_003552222.1| chr0 133328014 133337632 -
3 domain predictions
 –
Lj1g3v0884410.1
n.a. PREDICTED: NAD kinase 2, chloroplastic-like [Glycine max] gi|356515937|ref|XP_003526653.1| chr1 11254516 11260309 -
3 domain predictions
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Lj1g3v1182240.1
n.a. PREDICTED: laforin-like [Glycine max] gi|356516265|ref|XP_003526816.1| chr1 14478421 14481745 -
3 domain predictions
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Lj1g3v1454030.1
n.a. PREDICTED: dual specificity protein phosphatase PHS1-like [Cicer arietinum] gi|502133383|ref|XP_004501744.1| chr1 17440626 17448475 -
3 domain predictions
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Lj1g3v2822780.1
n.a. PREDICTED: probable tyrosine-protein phosphatase At1g05000-like [Cicer arietinum] gi|502105563|ref|XP_004492836.1| chr1 32130776 32132365 +
3 domain predictions
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Lj1g3v2995580.1
n.a. PREDICTED: phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like [Glycine max] gi|356526467|ref|XP_003531839.1| chr1 34093825 34098324 -
3 domain predictions
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Lj1g3v2995580.2
n.a. PREDICTED: phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like [Glycine max] gi|356526467|ref|XP_003531839.1| chr1 34093825 34098324 -
3 domain predictions
 –
Lj1g3v3183530.1
n.a. PREDICTED: protein-tyrosine-phosphatase MKP1-like [Cicer arietinum] gi|502102464|ref|XP_004492084.1| chr1 36267168 36269313 +
3 domain predictions
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Lj1g3v3641900.1
n.a. PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic-like [Cicer arietinum] gi|502170387|ref|XP_004514819.1| chr1 41881275 41888584 -
3 domain predictions
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Lj1g3v4107140.1
n.a. PREDICTED: dual specificity protein phosphatase 12-like isoform X2 [Cicer arietinum] gi|502108122|ref|XP_004493392.1| chr1 48870142 48873448 +
3 domain predictions
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Lj1g3v4419670.1
n.a. PREDICTED: mRNA-capping enzyme-like [Glycine max] gi|356570562|ref|XP_003553454.1| chr1 51456840 51464722 +
3 domain predictions
 –
Lj1g3v4419670.2
n.a. PREDICTED: mRNA-capping enzyme-like [Glycine max] gi|356570562|ref|XP_003553454.1| chr1 51457055 51465527 +
3 domain predictions
 –
Lj1g3v4419670.3
n.a. PREDICTED: mRNA-capping enzyme-like [Glycine max] gi|356570562|ref|XP_003553454.1| chr1 51458663 51464405 +
3 domain predictions
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Lj1g3v4862660.1
n.a. n.a. chr1 58780975 58788531 -
2 domain predictions
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Lj2g3v1549780.1
n.a. PREDICTED: formin-like protein 20-like [Glycine max] gi|356513519|ref|XP_003525461.1| chr2 24420932 24429657 +
2 domain predictions
 –
Lj2g3v1549780.2
n.a. Formin-like protein, partial [Medicago truncatula] gi|357484593|ref|XP_003612584.1| chr2 24420932 24429657 +
2 domain predictions
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Lj2g3v1904480.1
n.a. Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Medicago truncatula] gi|357482767|ref|XP_003611670.1| chr2 28266262 28272156 +
3 domain predictions
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Lj2g3v2856060.1
n.a. PREDICTED: protein-tyrosine-phosphatase IBR5-like [Glycine max] gi|356501245|ref|XP_003519436.1| chr2 37286685 37291316 +
3 domain predictions
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Lj2g3v2878400.1
n.a. PREDICTED: probable tyrosine-protein phosphatase At1g05000-like [Glycine max] gi|356522035|ref|XP_003529655.1| chr2 37478520 37481406 +
3 domain predictions
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Lj3g3v1603870.1
n.a. PREDICTED: mRNA-capping enzyme-like [Glycine max] gi|356504293|ref|XP_003520931.1| chr3 20307783 20324220 -
3 domain predictions
 –
Lj3g3v1603870.2
n.a. PREDICTED: mRNA-capping enzyme-like [Glycine max] gi|356496154|ref|XP_003516935.1| chr3 20307783 20324220 -
3 domain predictions
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Lj4g3v1217120.1
n.a. PREDICTED: protein-tyrosine phosphatase mitochondrial 1-like protein-like [Glycine max] gi|356510670|ref|XP_003524059.1| chr4 18103304 18107179 -
3 domain predictions
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Lj4g3v1983370.1
n.a. PREDICTED: formin-like protein 13-like [Cicer arietinum] gi|502149970|ref|XP_004507730.1| chr4 27536192 27546524 -
3 domain predictions
 –
Lj4g3v1983370.2
n.a. PREDICTED: formin-like protein 13-like [Cicer arietinum] gi|502149970|ref|XP_004507730.1| chr4 27536192 27546524 -
3 domain predictions
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Lj4g3v2400750.1
n.a. PREDICTED: dual specificity protein phosphatase 1-like isoform X1 [Cicer arietinum] gi|502151309|ref|XP_004508377.1| chr4 33142302 33145580 -
3 domain predictions
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Lj4g3v2400750.2
n.a. PREDICTED: dual specificity protein phosphatase 1-like isoform X2 [Cicer arietinum] gi|502151311|ref|XP_004508378.1| chr4 33142302 33145580 -
3 domain predictions
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Lj4g3v2882030.1
n.a. PREDICTED: dual specificity protein phosphatase PHS1-like [Cicer arietinum] gi|502139515|ref|XP_004503799.1| chr4 38497942 38503834 -
3 domain predictions
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Lj4g3v3032690.1
n.a. PREDICTED: protein-tyrosine phosphatase mitochondrial 1-like [Glycine max] gi|356523809|ref|XP_003530527.1| chr4 40607657 40610010 -
3 domain predictions
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Lj4g3v3044970.1
n.a. tRNA A64-2'-O-ribosylphosphate transferase [Medicago truncatula] gi|357520857|ref|XP_003630717.1| chr4 40678938 40686527 +
3 domain predictions
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Lj4g3v3044970.2
n.a. tRNA A64-2'-O-ribosylphosphate transferase [Medicago truncatula] gi|357520857|ref|XP_003630717.1| chr4 40678938 40686527 +
3 domain predictions
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Lj5g3v0483820.1
n.a. PREDICTED: formin-like protein 13-like [Cicer arietinum] gi|502125537|ref|XP_004498964.1| chr5 4858620 4872880 -
3 domain predictions
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Lj5g3v1535580.1
n.a. PREDICTED: paladin-like [Cicer arietinum] gi|502117477|ref|XP_004495834.1| chr5 22568402 22578169 +
3 domain predictions
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Lj5g3v1699470.1
n.a. PREDICTED: phosphoglucan phosphatase DSP4, chloroplastic-like [Cicer arietinum] gi|502118212|ref|XP_004496155.1| chr5 24725958 24733943 +
3 domain predictions
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Lj5g3v1737130.1
n.a. PREDICTED: myotubularin-related protein 2-like [Glycine max] gi|356574661|ref|XP_003555464.1| chr5 24956039 24962127 +
2 domain predictions
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Lj5g3v1815040.1
n.a. PREDICTED: NAD kinase 2, chloroplastic-like [Glycine max] gi|356552711|ref|XP_003544706.1| chr5 26068429 26074790 -
3 domain predictions
 –
Lj5g3v1872920.1
n.a. PREDICTED: protein-tyrosine-phosphatase PTP1-like isoform X1 [Cicer arietinum] gi|502118733|ref|XP_004496384.1| chr5 26756111 26760696 -
3 domain predictions
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Lj5g3v2014030.1
n.a. PREDICTED: protein-tyrosine-phosphatase PTP1-like isoform X1 [Cicer arietinum] gi|502118733|ref|XP_004496384.1| chr5 28450711 28459789 -
3 domain predictions
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Lj5g3v2133750.1
n.a. PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like [Cicer arietinum] gi|502120442|ref|XP_004496964.1| chr5 30618205 30624051 -
3 domain predictions
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Lj5g3v2240850.1
n.a. Phosphotyrosine protein phosphatases superfamily protein [Theobroma cacao] gi|508721723|gb|EOY13620.1| chr5 32196349 32198915 -
3 domain predictions
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Lj6g3v0574850.1
n.a. PREDICTED: protein-tyrosine-phosphatase MKP1-like isoform X1 [Cicer arietinum] gi|502135593|ref|XP_004502386.1| chr6 5731146 5735480 -
3 domain predictions
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Lj6g3v0574860.1
n.a. PREDICTED: protein-tyrosine-phosphatase MKP1-like isoform X2 [Cicer arietinum] gi|502135596|ref|XP_004502387.1| chr6 5731394 5735480 -
3 domain predictions
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LotjaGi1g1v0067300.1
n.a. Tyrosine-protein phosphatase; TAIR: AT1G05000.1 Phosphotyrosine protein phosphatases superfamily protein; Swiss-Prot: sp|Q9ZVN4|Y1500_ARATH Probable tyrosine-protein phosphatase At1g05000; TrEMBL-Plants: tr|A0A0L9UVM0|A0A0L9UVM0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0067300 LjG1.1_chr1 9275302 9284708 -
3 domain predictions
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LotjaGi1g1v0068800.1
n.a. Dual specificity protein phosphatase, putative; TAIR: AT2G04550.1 indole-3-butyric acid response 5; Swiss-Prot: sp|Q84JU4|IBR5_ARATH Protein-tyrosine-phosphatase IBR5; TrEMBL-Plants: tr|I1JIH0|I1JIH0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0068800 LjG1.1_chr1 9488950 9494300 -
3 domain predictions
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LotjaGi1g1v0157200.1
n.a. NAD kinase; TAIR: AT1G21640.1 NAD kinase 2; Swiss-Prot: sp|Q9C5W3|NADK2_ARATH NAD kinase 2, chloroplastic; TrEMBL-Plants: tr|K7M700|K7M700_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0157200 LjG1.1_chr1 29176991 29183473 +
3 domain predictions
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LotjaGi1g1v0193800_LC.1
n.a. Formin-like protein; TAIR: AT5G07740.3 actin binding protein; Swiss-Prot: sp|Q9FLQ7|FH20_ARATH Formin-like protein 20; TrEMBL-Plants: tr|A0A1J7J358|A0A1J7J358_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0193800_LC LjG1.1_chr1 38325116 38344182 +
3 domain predictions
 –