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| Field | Value |
|---|---|
| Gene ID | Lj2g3v2879450 |
| Transcript ID | Lj2g3v2879450.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Nuclear factor NF-kappa-B p105 subunit [Medicago truncatula] gi|357493197|ref|XP_003616887.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 37 | 37 | – | – | |
| Phobius | 1 | 195 | 195 | – | – | |
| PANTHER | 36 | 347 | 312 | 2.50E-195 | – | |
| PANTHER | 36 | 347 | 312 | 2.50E-195 | – | |
| CDD | 40 | 124 | 85 | 5.57E-08 | – | |
| Gene3D | 41 | 124 | 84 | 1.40E-08 | ||
| SUPERFAMILY | 42 | 124 | 83 | 1.26E-06 | ||
| Pfam | 187 | 297 | 111 | 3.00E-22 | ||
| Phobius | 196 | 214 | 19 | – | – | |
| Phobius | 215 | 233 | 19 | – | – | |
| Phobius | 234 | 254 | 21 | – | – | |
| TMHMM | 235 | 257 | 23 | – | – | |
| Phobius | 255 | 273 | 19 | – | – | |
| TMHMM | 270 | 292 | 23 | – | – | |
| Phobius | 274 | 299 | 26 | – | – | |
| Phobius | 300 | 310 | 11 | – | – | |
| TMHMM | 307 | 329 | 23 | – | – | |
| Phobius | 311 | 331 | 21 | – | – | |
| Phobius | 332 | 351 | 20 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of Lj2g3v2879450.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v2879450.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.