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| Field | Value |
|---|---|
| Gene ID | Lj2g3v2899930 |
| Transcript ID | Lj2g3v2899930.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Nitrate transporter [Medicago truncatula] gi|357493285|ref|XP_003616931.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 42 | 42 | – | – | |
| PANTHER | 6 | 584 | 579 | 0 | – | |
| PANTHER | 6 | 584 | 579 | 0 | ||
| SUPERFAMILY | 23 | 125 | 103 | 5.49E-33 | ||
| Phobius | 43 | 62 | 20 | – | – | |
| Gene3D | 46 | 246 | 201 | 1.80E-09 | – | |
| Phobius | 63 | 73 | 11 | – | – | |
| TMHMM | 71 | 93 | 23 | – | – | |
| Phobius | 74 | 93 | 20 | – | – | |
| Phobius | 94 | 98 | 5 | – | – | |
| Phobius | 99 | 120 | 22 | – | – | |
| Pfam | 100 | 513 | 414 | 3.40E-108 | ||
| TMHMM | 100 | 122 | 23 | – | – | |
| Phobius | 121 | 195 | 75 | – | – | |
| TMHMM | 149 | 171 | 23 | – | – | |
| SUPERFAMILY | 152 | 250 | 99 | 5.49E-33 | ||
| TMHMM | 191 | 213 | 23 | – | – | |
| Phobius | 196 | 215 | 20 | – | – | |
| Phobius | 216 | 220 | 5 | – | – | |
| Phobius | 221 | 245 | 25 | – | – | |
| TMHMM | 223 | 245 | 23 | – | – | |
| Phobius | 246 | 333 | 88 | – | – | |
| SUPERFAMILY | 318 | 556 | 239 | 5.49E-33 | ||
| Gene3D | 333 | 557 | 225 | 9.20E-09 | – | |
| CDD | 334 | 548 | 215 | 7.42E-06 | ||
| TMHMM | 334 | 356 | 23 | – | – | |
| Phobius | 334 | 351 | 18 | – | – | |
| Phobius | 352 | 370 | 19 | – | – | |
| Phobius | 371 | 390 | 20 | – | – | |
| TMHMM | 371 | 390 | 20 | – | – | |
| Phobius | 391 | 410 | 20 | – | – | |
| TMHMM | 410 | 432 | 23 | – | – | |
| Phobius | 411 | 432 | 22 | – | – | |
| Phobius | 433 | 451 | 19 | – | – | |
| TMHMM | 447 | 469 | 23 | – | – | |
| Phobius | 452 | 475 | 24 | – | – | |
| Phobius | 476 | 486 | 11 | – | – | |
| Phobius | 487 | 508 | 22 | – | – | |
| TMHMM | 489 | 508 | 20 | – | – | |
| Phobius | 509 | 527 | 19 | – | – | |
| Phobius | 528 | 548 | 21 | – | – | |
| TMHMM | 528 | 547 | 20 | – | – | |
| Phobius | 549 | 585 | 37 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj2g3v2899930.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v2899930.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.