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Lj2g3v2925120.1

Overview

Field Value
Gene ID Lj2g3v2925120
Transcript ID Lj2g3v2925120.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic-like [Glycine max] gi|356521610|ref|XP_003529447.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13288:SF8
1 153 153 1.00E-98 –
PIRSF
PIRSF031066
1 158 158 6.20E-86
IPR016967
ProSiteProfiles
PS50174
1 40 40 15.639
IPR000467
Pfam
PF01585
1 36 36 1.60E-15
IPR000467
SMART
SM00443
1 38 38 7.80E-11
IPR000467
PANTHER
PTHR13288
1 153 153 1.00E-98 –
CDD
cd12647
55 151 97 9.85E-59 –
Gene3D
G3DSA:3.30.70.330
56 141 86 8.20E-22
IPR012677
ProSiteProfiles
PS50102
57 143 87 9.712
IPR000504
SMART
SM00361
58 139 82 1.90E-26
IPR003954
SUPERFAMILY
SSF54928
58 145 88 1.36E-15
IPR012677
Pfam
PF00076
109 137 29 2.10E-04
IPR000504

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj2g3v2925120.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v2925120.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.