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Lj2g3v3008590.1

Overview

Field Value
Gene ID Lj2g3v3008590
Transcript ID Lj2g3v3008590.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: dihydropyrimidinase-like isoform X1 [Cicer arietinum] gi|502098432|ref|XP_004491233.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP
SignalP-noTM_EUK
1 33 33 – –
Phobius
SIGNAL_PEPTIDE_N_REGION
1 14 14 – –
Phobius
SIGNAL_PEPTIDE
1 33 33 – –
TMHMM
TMhelix
7 29 23 – –
Phobius
SIGNAL_PEPTIDE_H_REGION
15 26 12 – –
Phobius
SIGNAL_PEPTIDE_C_REGION
27 33 7 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
34 216 183 – –
PANTHER
PTHR11647:SF1
40 204 165 1.20E-70 –
PANTHER
PTHR11647
40 204 165 1.20E-70 –
SUPERFAMILY
SSF51338
52 147 96 8.63E-19
IPR011059
Gene3D
G3DSA:2.30.40.10
60 125 66 3.40E-29
IPR011059
Pfam
PF01979
108 192 85 6.80E-08
IPR006680
SUPERFAMILY
SSF51556
112 205 94 6.81E-10
IPR032466
Gene3D
G3DSA:3.20.20.140
126 206 81 2.40E-23 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016787
Molecular function Hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
Subterm of
GO:0016810
Molecular function Hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Catalysis of the hydrolysis of any carbon-nitrogen bond, C-N, with the exception of peptide bonds.
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj2g3v3008590.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v3008590.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.