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IPR011059 is a Metal-dependent hydrolase, composite domain superfamily.
<p>The composite domain of metal-dependent hydrolases has a pseudo-barrel fold that is interrupted by the catalytic β/α barrel domain. This domain is found in a variety of bacterial and fungal enzymes, including: cytosine deaminase, an enzyme that is important in the pyrimidine salvage pathway [[cite:PUB00014255]]; the alpha-subunit of urease, a virulence factor of gastric pathogens such as Helicobacter pylori (Campylobacter pylori) [[cite:PUB00014256]]; D- and L-hydantoinases (dihydropyrimidinase), which catalyse the production of D- and L-amino acids, respectively [[cite:PUB00014257]]; isoaspartyl dipeptidase from Escherichia coli, which functions in protein degradation [[cite:PUB00014258]]; N-acetylglucosamine-6-phosphate deacetylase, which is an enzyme from the biosynthetic pathway to amino-sugar-nucleotides [[cite:PUB00014260]]; and N-acyl-D-amino acid amidohydrolase (D-aminoacylase), involved in the synthesis of D-amino acids [[cite:PUB00014261]].</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | Catalysis of the hydrolysis of any carbon-nitrogen bond, C-N, with the exception of peptide bonds. |
Transcript | Name | Description | Predicted domains | Domain count |
---|---|---|---|---|
– | LAF3 isoform [Medicago truncatula] gi|357456493|ref|XP_003598527.1| | 11 | ||
– | LAF3 isoform [Medicago truncatula] gi|357456493|ref|XP_003598527.1| | 18 | ||
– | Amidohydrolase family, ISF2 isoform 2 [Theobroma cacao] gi|508727884|gb|EOY19781.1| | 9 | ||
– | PREDICTED: 5-methylthioadenosine/S-adenosylhomocysteine deaminase-like isoform X1 [Cicer arietinum] gi|502121742|ref|XP_004497426.1| | 14 | ||
– | PREDICTED: 5-methylthioadenosine/S-adenosylhomocysteine deaminase-like isoform X1 [Cicer arietinum] gi|502121742|ref|XP_004497426.1| | 11 | ||
– | PREDICTED: urease-like [Cicer arietinum] gi|502135386|ref|XP_004502315.1| | 34 | ||
– | PREDICTED: dihydropyrimidinase-like isoform X1 [Cicer arietinum] gi|502098432|ref|XP_004491233.1| | 17 | ||
– | PREDICTED: dihydropyrimidinase-like isoform X1 [Cicer arietinum] gi|502098432|ref|XP_004491233.1| | 18 | ||
– | PREDICTED: dihydropyrimidinase-like isoform X1 [Cicer arietinum] gi|502098432|ref|XP_004491233.1| | 23 | ||
– | Allantoinase [Robinia pseudoacacia] gi|39653353|gb|AAR29343.1| | 19 | ||
– | Allantoinase [Robinia pseudoacacia] gi|39653353|gb|AAR29343.1| | 14 | ||
– | Dihydropyrimidinase; TAIR: AT5G12200.1 pyrimidine 2; Swiss-Prot: sp|Q9FMP3|DPYS_ARATH Dihydropyrimidinase; TrEMBL-Plants: tr|G7K315|G7K315_MEDTR Dihydropyrimidinase; Found in the gene: LotjaGi1g1v0051700 | 20 | ||
– | Dihydropyrimidinase; TAIR: AT5G12200.1 pyrimidine 2; Swiss-Prot: sp|Q9FMP3|DPYS_ARATH Dihydropyrimidinase; TrEMBL-Plants: tr|G7K315|G7K315_MEDTR Dihydropyrimidinase; Found in the gene: LotjaGi1g1v0051700 | 20 | ||
– | Dihydropyrimidinase; TAIR: AT5G12200.1 pyrimidine 2; Swiss-Prot: sp|Q9FMP3|DPYS_ARATH Dihydropyrimidinase; TrEMBL-Plants: tr|A0A151T7P5|A0A151T7P5_CAJCA Dihydropyrimidinase; Found in the gene: LotjaGi1g1v0051700 | 13 | ||
– | Dihydropyrimidinase; TAIR: AT5G12200.1 pyrimidine 2; Swiss-Prot: sp|Q9FMP3|DPYS_ARATH Dihydropyrimidinase; TrEMBL-Plants: tr|A0A151T7P5|A0A151T7P5_CAJCA Dihydropyrimidinase; Found in the gene: LotjaGi1g1v0051700 | 13 | ||
– | Dihydropyrimidinase; TAIR: AT5G12200.1 pyrimidine 2; Swiss-Prot: sp|Q9FMP3|DPYS_ARATH Dihydropyrimidinase; TrEMBL-Plants: tr|G7K315|G7K315_MEDTR Dihydropyrimidinase; Found in the gene: LotjaGi1g1v0051700 | 13 | ||
– | Dihydropyrimidinase; TAIR: AT5G12200.1 pyrimidine 2; Swiss-Prot: sp|Q9FMP3|DPYS_ARATH Dihydropyrimidinase; TrEMBL-Plants: tr|A0A151T7P5|A0A151T7P5_CAJCA Dihydropyrimidinase; Found in the gene: LotjaGi1g1v0051700 | 13 | ||
– | Dihydropyrimidinase; TAIR: AT5G12200.1 pyrimidine 2; Swiss-Prot: sp|Q9FMP3|DPYS_ARATH Dihydropyrimidinase; TrEMBL-Plants: tr|G7KCW0|G7KCW0_MEDTR Dihydropyrimidinase; Found in the gene: LotjaGi1g1v0051800 | 19 | ||
– | Phosphomethylpyrimidine synthase; TAIR: AT3G55850.1 Amidohydrolase family; Swiss-Prot: sp|O34355|YTCJ_BACSU Putative amidohydrolase YtcJ; TrEMBL-Plants: tr|K7M0Q9|K7M0Q9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0318200 | 12 | ||
– | Amidohydrolase family; TAIR: AT3G55850.5 Amidohydrolase family; Swiss-Prot: sp|O34355|YTCJ_BACSU Putative amidohydrolase YtcJ; TrEMBL-Plants: tr|K7M0Q9|K7M0Q9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0318200 | 19 | ||
– | 5-methylthioadenosine/S-adenosylhomocysteine deaminase; TAIR: AT3G55850.3 Amidohydrolase family; Swiss-Prot: sp|A5UMN6|DADD_METS3 5'-deoxyadenosine deaminase; TrEMBL-Plants: tr|I1NJF1|I1NJF1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0331900 | 11 | ||
– | Urease subunit alpha; TAIR: AT1G67550.1 urease; Swiss-Prot: sp|P07374|UREA_CANEN Urease; TrEMBL-Plants: tr|Q949H4|Q949H4_SOYBN Urease; Found in the gene: LotjaGi6g1v0101300 | 38 | ||
– | Urease subunit alpha; TAIR: AT1G67550.1 urease; Swiss-Prot: sp|P07374|UREA_CANEN Urease; TrEMBL-Plants: tr|Q949H4|Q949H4_SOYBN Urease; Found in the gene: LotjaGi6g1v0101300 | 33 | ||
– | Urease subunit alpha; TAIR: AT1G67550.1 urease; Swiss-Prot: sp|P07374|UREA_CANEN Urease; TrEMBL-Plants: tr|Q949H4|Q949H4_SOYBN Urease; Found in the gene: LotjaGi6g1v0101300 | 29 | ||
– | Allantoinase; TAIR: AT4G04955.1 allantoinase; Swiss-Prot: sp|Q94AP0|ALN_ARATH Allantoinase; TrEMBL-Plants: tr|Q6S4R9|Q6S4R9_ROBPS Allantoinase; Found in the gene: LotjaGi6g1v0333200 | 15 |
A list of co-occurring predicted domains within the L. japonicus gene space:
Predicted domain | Source | Observations | Saturation (%) |
---|---|---|---|
TRANSMEMBRANE | Phobius | 1 | 4.00 |